Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 3.7e-38 161.0 78 100.0
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.9e-19 98.2 57 89.5
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.2e-17 92.8 61 85.2
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 2.8e-17 91.7 57 82.5
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 4.7e-17 90.9 57 84.2
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 8.0e-17 90.1 61 82.0
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 8.0e-17 90.1 59 79.7
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.0e-17 90.1 59 79.7
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 8.0e-17 90.1 61 82.0
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.0e-16 89.7 57 84.2
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.0e-16 89.7 57 84.2
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.0e-16 89.7 57 84.2
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.0e-16 89.7 61 82.0
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.0e-16 89.7 57 82.5
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.0e-16 89.7 57 84.2
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.4e-16 89.4 57 82.5
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.4e-16 89.4 57 82.5
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.4e-16 89.4 57 82.5
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.4e-16 89.4 57 82.5
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.4e-16 89.4 57 82.5
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.4e-16 89.4 57 82.5
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.4e-16 89.4 57 82.5
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.4e-16 89.4 57 82.5
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.4e-16 89.4 57 82.5
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.8e-16 89.0 57 82.5
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 1.8e-16 89.0 57 82.5
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.8e-16 89.0 57 82.5
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.8e-16 89.0 57 82.5
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.8e-16 89.0 61 80.3
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 2.3e-16 88.6 57 82.5
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 2.3e-16 88.6 57 80.7
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 2.3e-16 88.6 57 82.5
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.0e-16 88.2 57 82.5
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.0e-16 88.2 57 80.7
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 4.0e-16 87.8 57 80.7
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 4.0e-16 87.8 61 80.3
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.0e-16 87.8 59 78.0
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 4.0e-16 87.8 57 80.7
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 5.2e-16 87.4 57 78.9
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 5.2e-16 87.4 57 80.7
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 6.8e-16 87.0 57 80.7
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 6.8e-16 87.0 57 80.7
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 1.2e-15 86.3 57 78.9
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.2e-15 86.3 57 78.9
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.2e-15 86.3 57 78.9
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.2e-15 86.3 57 78.9
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.2e-15 86.3 57 80.7
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.2e-15 86.3 56 78.6
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.2e-15 86.3 56 78.6
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.2e-15 86.3 57 77.2
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.2e-15 86.3 57 78.9
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.5e-15 85.9 57 78.9
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 2.0e-15 85.5 57 78.9
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 2.0e-15 85.5 57 77.2
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 2.0e-15 85.5 57 78.9
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.0e-15 85.5 57 78.9
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 2.0e-15 85.5 56 78.6
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.6e-15 85.1 57 78.9
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 2.6e-15 85.1 57 77.2
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.6e-15 85.1 57 78.9
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 3.4e-15 84.7 57 75.4
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 4.4e-15 84.3 56 76.8
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 5.7e-15 84.0 57 75.4
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 5.7e-15 84.0 57 75.4
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 5.7e-15 84.0 57 75.4
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 5.7e-15 84.0 57 75.4
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 5.7e-15 84.0 57 75.4
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 5.7e-15 84.0 57 75.4
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 5.7e-15 84.0 57 75.4
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 5.7e-15 84.0 57 77.2
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 5.7e-15 84.0 70 64.3
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 5.7e-15 84.0 57 78.9
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 5.7e-15 84.0 57 78.9
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 5.7e-15 84.0 57 75.4
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 7.5e-15 83.6 57 75.4
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 7.5e-15 83.6 54 79.6
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 7.5e-15 83.6 54 79.6
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 9.8e-15 83.2 57 73.7
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 9.8e-15 83.2 57 73.7
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 9.8e-15 83.2 54 77.8
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 9.8e-15 83.2 54 77.8
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 9.8e-15 83.2 57 73.7
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 9.8e-15 83.2 57 73.7
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.3e-14 82.8 57 77.2
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.7e-14 82.4 55 74.5
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.7e-14 82.4 57 77.2
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 1.7e-14 82.4 54 79.6
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.7e-14 82.4 57 75.4
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.7e-14 82.4 54 75.9
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 2.2e-14 82.0 57 73.7
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.2e-14 82.0 57 73.7
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 2.2e-14 82.0 57 75.4
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 2.9e-14 81.6 57 75.4
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 2.9e-14 81.6 57 75.4
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.9e-14 81.6 57 73.7
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 3.7e-14 81.3 57 73.7
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 4.9e-14 80.9 55 72.7
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 4.9e-14 80.9 55 72.7
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 4.9e-14 80.9 54 75.9
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.9e-14 80.9 57 73.7
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 4.9e-14 80.9 57 75.4
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 4.9e-14 80.9 57 70.2
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.3e-14 80.5 57 73.7
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.1e-13 79.7 57 75.4
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.4e-13 78.6 57 68.4
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 4.1e-13 77.8 55 72.7
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 4.1e-13 77.8 57 71.9
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 5.4e-13 77.4 55 69.1
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 5.4e-13 77.4 57 70.2
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.4e-13 77.4 57 70.2
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 5.4e-13 77.4 57 68.4
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 9.2e-13 76.6 54 74.1
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-12 76.3 57 68.4
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.6e-12 75.9 53 73.6
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.6e-12 75.9 53 73.6
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.6e-12 75.9 53 77.4
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.7e-12 75.1 55 70.9
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 5.9e-12 73.9 57 71.9
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 7.8e-12 73.6 57 66.7
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 1.7e-11 72.4 43 86.0
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 2.3e-11 72.0 57 63.2
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 3.3e-10 68.2 57 59.6
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 4.3e-10 67.8 47 76.6
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.6e-09 65.9 55 58.2
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 6.2e-09 63.9 55 56.4
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.0e-08 63.2 44 70.5
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.4e-08 62.8 55 61.8
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 2.0e-07 58.9 68 48.5
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 4.4e-07 57.8 57 56.1


User provided reference genes

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