Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 9.1e-53 209.9 102 100.0
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 8.2e-38 160.2 100 75.0
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 2.0e-36 155.6 98 72.4
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.7e-36 155.2 98 73.5
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 2.9e-35 151.8 99 71.7
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 2.9e-35 151.8 100 70.0
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.1e-34 149.8 100 70.0
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.5e-34 149.4 98 71.4
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.2e-34 148.3 100 66.0
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 3.2e-34 148.3 99 66.7
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.2e-34 148.3 98 70.4
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 3.2e-34 148.3 98 70.4
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.2e-34 147.9 97 71.1
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.5e-34 147.5 100 69.0
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 7.2e-34 147.1 102 63.7
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.2e-33 146.4 99 66.7
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.2e-33 146.4 97 70.1
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.2e-33 146.4 97 67.0
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.2e-33 146.4 98 64.3
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.6e-33 146.0 97 70.1
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.6e-33 146.0 97 69.1
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 1.6e-33 146.0 98 69.4
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.1e-33 145.6 99 65.7
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 3.6e-33 144.8 95 67.4
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.6e-33 144.8 97 68.0
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 4.7e-33 144.4 99 69.7
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 6.1e-33 144.1 98 66.3
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.0e-32 143.3 99 68.7
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.0e-32 143.3 92 72.8
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.8e-32 142.5 99 64.6
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.8e-32 142.5 100 64.0
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 1.8e-32 142.5 98 64.3
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.3e-32 142.1 100 65.0
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 4.0e-32 141.4 99 63.6
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.2e-32 141.0 97 67.0
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 5.2e-32 141.0 99 66.7
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 6.8e-32 140.6 99 61.6
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 8.8e-32 140.2 99 62.6
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 8.8e-32 140.2 99 63.6
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 8.8e-32 140.2 106 62.3
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.2e-31 139.8 98 63.3
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.2e-31 139.8 97 66.0
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 2.6e-31 138.7 99 61.6
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 3.4e-31 138.3 100 61.0
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 5.7e-31 137.5 96 62.5
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 5.7e-31 137.5 97 62.9
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.7e-31 137.5 100 60.0
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 7.5e-31 137.1 98 63.3
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 9.8e-31 136.7 96 62.5
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 9.8e-31 136.7 100 63.0
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 9.8e-31 136.7 96 62.5
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 9.8e-31 136.7 99 63.6
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.3e-30 136.3 95 68.4
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.7e-30 136.0 101 62.4
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 1.7e-30 136.0 99 60.6
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.7e-30 136.0 100 65.0
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.7e-30 136.0 100 62.0
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 1.7e-30 136.0 100 61.0
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 2.2e-30 135.6 98 61.2
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 2.8e-30 135.2 100 60.0
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 3.7e-30 134.8 97 62.9
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 3.7e-30 134.8 100 63.0
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.7e-30 134.8 96 67.7
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 3.7e-30 134.8 87 71.3
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 4.8e-30 134.4 97 62.9
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 4.8e-30 134.4 96 61.5
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 6.3e-30 134.0 97 61.9
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 8.3e-30 133.7 97 59.8
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 8.3e-30 133.7 98 59.2
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 8.3e-30 133.7 96 61.5
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.1e-29 133.3 102 59.8
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.4e-29 132.9 97 66.0
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.8e-29 132.5 97 64.9
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.8e-29 132.5 96 60.4
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.1e-29 131.3 96 63.5
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 4.1e-29 131.3 99 61.6
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 4.1e-29 131.3 97 61.9
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 5.4e-29 131.0 99 59.6
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 5.4e-29 131.0 99 61.6
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 5.4e-29 131.0 96 60.4
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 5.4e-29 131.0 96 60.4
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 7.0e-29 130.6 100 60.0
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 7.0e-29 130.6 100 60.0
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.2e-28 129.8 100 61.0
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.6e-28 129.4 96 59.4
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.0e-28 129.0 100 60.0
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 2.0e-28 129.0 100 60.0
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 2.7e-28 128.6 99 58.6
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 3.5e-28 128.3 98 58.2
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 4.5e-28 127.9 100 60.0
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 4.5e-28 127.9 100 60.0
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 4.5e-28 127.9 100 60.0
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 4.5e-28 127.9 97 59.8
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 5.9e-28 127.5 100 60.0
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 7.7e-28 127.1 100 59.0
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.0e-27 126.7 101 57.4
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.0e-27 126.7 96 59.4
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.7e-27 125.9 100 60.0
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.7e-27 125.9 100 58.0
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.3e-27 125.6 97 58.8
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.3e-27 125.6 96 60.4
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.9e-27 125.2 100 60.0
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 5.0e-27 124.4 97 59.8
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 8.6e-27 123.6 97 59.8
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 8.6e-27 123.6 99 60.6
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 4.2e-26 121.3 103 53.4
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.2e-26 121.3 94 56.4
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 1.6e-25 119.4 100 56.0
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.8e-25 118.6 100 58.0
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 3.6e-25 118.2 106 50.0
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 4.7e-25 117.9 101 57.4
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 6.1e-25 117.5 97 61.9
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.3e-24 115.5 104 53.8
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 5.2e-24 114.4 92 57.6
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 8.9e-24 113.6 77 71.4
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.5e-23 112.8 98 53.1
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 2.0e-23 112.5 100 53.0
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 2.0e-23 112.5 100 53.0
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 5.7e-23 110.9 98 50.0
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 3.1e-21 105.1 94 53.2
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 3.1e-21 105.1 107 49.5
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 4.1e-21 104.8 94 53.2
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 5.4e-21 104.4 60 73.3
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 7.0e-21 104.0 86 61.6
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 4.5e-20 101.3 112 42.9
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.0e-19 100.1 89 56.2
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.0e-19 100.1 61 68.9
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 1.3e-19 99.8 106 43.4
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.7e-19 99.4 60 71.7
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.3e-19 99.0 101 43.6
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 2.3e-19 99.0 69 60.9
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 6.6e-19 97.4 74 64.9
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.1e-18 96.7 96 45.8
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.5e-18 96.3 101 42.6
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 4.3e-18 94.7 70 58.6
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 4.7e-17 91.3 60 66.7
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.0e-16 88.2 73 54.8
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 8.9e-16 87.0 71 52.1
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 2.6e-15 85.5 60 55.0
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.8e-13 79.3 105 41.0
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.3e-11 72.4 60 51.7
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 1.5e-10 69.7 65 46.2
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.3e-10 68.2 101 40.6
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.3e-10 68.2 101 40.6
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.6e-09 66.2 101 39.6
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.8e-08 62.8 44 70.5
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.3e-08 62.4 55 43.6
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.2e-07 60.1 99 34.3
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.8e-07 57.8 35 65.7
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 1.7e-06 56.2 113 36.3
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 4.9e-06 54.7 104 31.7


User provided reference genes

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