Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 8.9e-93 343.6 173 100.0
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 6.0e-73 277.7 173 78.0
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 1.0e-72 276.9 171 78.4
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.1e-70 269.2 173 76.3
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.1e-70 269.2 173 76.3
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.1e-70 269.2 173 76.3
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 3.6e-70 268.5 175 76.0
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 3.6e-70 268.5 173 76.9
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 4.8e-70 268.1 173 76.9
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 4.8e-70 268.1 174 76.4
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.8e-70 268.1 173 76.3
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 6.2e-70 267.7 173 74.6
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 1.1e-69 266.9 173 74.6
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.4e-69 266.5 174 75.3
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 1.4e-69 266.5 173 74.6
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.8e-69 266.2 178 74.7
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.8e-69 266.2 173 76.3
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.8e-69 266.2 174 76.4
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 9.0e-69 263.8 175 76.0
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 1.2e-68 263.5 174 73.6
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.5e-68 263.1 175 75.4
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.6e-68 262.3 173 75.1
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 3.4e-68 261.9 175 74.9
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 5.8e-68 261.2 171 73.7
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 7.6e-68 260.8 173 74.0
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 2.2e-67 259.2 172 74.4
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.2e-67 259.2 174 75.9
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 2.9e-67 258.8 163 75.5
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.8e-67 258.5 163 74.8
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 4.9e-67 258.1 170 74.1
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 6.4e-67 257.7 163 76.1
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.1e-66 256.9 174 74.1
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 1.1e-66 256.9 173 72.8
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.4e-66 256.5 173 73.4
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.9e-66 256.1 172 72.7
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.4e-66 255.8 163 74.8
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 2.4e-66 255.8 173 70.5
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.4e-66 255.8 174 74.7
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 2.4e-66 255.8 181 70.2
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 2.4e-66 255.8 174 74.1
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 3.2e-66 255.4 176 71.6
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 4.2e-66 255.0 173 69.9
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 4.2e-66 255.0 165 74.5
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 4.2e-66 255.0 173 72.8
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 9.3e-66 253.8 181 70.7
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 9.3e-66 253.8 173 70.5
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.2e-65 253.4 163 74.2
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 1.2e-65 253.4 175 71.4
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.2e-65 253.4 174 71.8
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.2e-65 253.4 173 72.3
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.6e-65 253.1 204 65.7
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 3.5e-65 251.9 167 73.7
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 71.7
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.6e-65 251.5 204 65.2
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.6e-65 251.5 204 65.2
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 6.0e-65 251.1 171 71.9
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.0e-64 250.4 173 69.4
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.8e-64 249.6 173 72.3
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.8e-64 249.6 173 72.3
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 1.8e-64 249.6 174 73.0
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 2.3e-64 249.2 197 66.0
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 3.9e-64 248.4 173 71.1
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.9e-64 248.4 161 73.3
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 3.9e-64 248.4 178 69.1
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 3.9e-64 248.4 170 73.5
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 5.1e-64 248.1 173 71.1
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 5.1e-64 248.1 173 71.1
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 6.7e-64 247.7 171 70.8
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 8.7e-64 247.3 171 71.3
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.1e-63 246.9 173 70.5
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.5e-63 246.5 163 74.8
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 1.5e-63 246.5 163 73.0
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.5e-63 246.5 173 70.5
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.9e-63 246.1 173 70.5
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 1.9e-63 246.1 183 66.7
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 1.9e-63 246.1 167 73.7
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 2.5e-63 245.7 173 70.5
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 2.5e-63 245.7 173 70.5
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 2.5e-63 245.7 169 72.2
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 5.6e-63 244.6 173 71.1
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 5.6e-63 244.6 173 69.9
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 9.6e-63 243.8 173 67.6
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 9.6e-63 243.8 159 72.3
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.3e-62 243.4 173 70.5
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.3e-62 243.4 173 70.5
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 2.1e-62 242.7 176 71.0
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 2.1e-62 242.7 173 69.9
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 2.8e-62 242.3 173 69.9
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.8e-62 242.3 173 69.9
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 3.7e-62 241.9 166 69.9
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 3.7e-62 241.9 173 69.4
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 3.7e-62 241.9 170 70.0
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 6.2e-62 241.1 173 68.2
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 8.1e-62 240.7 208 59.6
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 8.1e-62 240.7 173 69.9
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.8e-61 239.6 165 72.1
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 1.8e-61 239.6 174 69.5
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 1.8e-61 239.6 174 69.5
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 3.1e-61 238.8 165 72.1
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 3.1e-61 238.8 165 72.1
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 4.0e-61 238.4 174 68.4
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 6.9e-61 237.7 176 70.5
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 3.2e-58 228.8 166 66.3
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 4.2e-58 228.4 190 64.7
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 7.1e-58 227.6 177 66.7
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 6.0e-57 224.6 220 57.3
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.3e-56 222.6 139 77.0
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 2.3e-56 222.6 144 75.7
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 3.0e-56 222.2 166 63.9
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.7e-56 221.1 213 59.6
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.1e-55 220.3 173 61.8
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.4e-53 213.4 227 52.4
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 7.6e-52 207.6 260 45.8
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 1.4e-50 203.4 186 59.7
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 2.1e-49 199.5 174 60.3
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 7.9e-49 197.6 120 78.3
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 9.7e-47 190.7 170 58.8
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 6.9e-45 184.5 113 76.1
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 5.0e-43 178.3 175 57.1
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 1.3e-38 163.7 98 81.6
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.8e-37 159.8 109 70.6
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 2.6e-36 156.0 143 51.7
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.3e-35 153.7 126 64.3
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 3.8e-35 152.1 109 69.7
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.5e-34 149.4 148 48.6
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 2.5e-34 149.4 139 50.4
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 5.5e-34 148.3 106 64.2
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 3.6e-33 145.6 116 62.1
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 8.8e-32 141.0 136 58.8
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 7.0e-29 131.3 89 68.5
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 9.1e-29 131.0 105 58.1
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 3.8e-27 125.6 103 61.2
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 2.6e-23 112.8 74 71.6
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 2.6e-23 112.8 74 71.6
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.6e-23 112.8 98 62.2
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 1.7e-22 110.2 112 42.9
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 2.8e-22 109.4 104 48.1
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.1e-21 107.5 110 42.7
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 3.1e-21 105.9 84 67.9
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.1e-21 105.9 98 58.2
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 5.3e-21 105.1 63 81.0
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 1.7e-19 100.1 61 78.7
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.9e-18 96.7 64 71.9
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 7.2e-18 94.7 65 70.8
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 8.0e-17 91.3 87 48.3
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 3.0e-16 89.4 63 66.7
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 1.2e-15 87.4 106 41.5
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 2.4e-13 79.7 136 35.3
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.5e-12 75.5 104 45.2
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 3.8e-11 72.4 47 70.2
QL04p024921 Quercus lobata HOM05D004886 ORTHO05D005868 2.2e-06 56.6 32 81.2
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 6.3e-06 55.1 32 81.2


User provided reference genes

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