Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 1.8e-77 292.7 172 100.0
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 6.9e-61 237.7 172 81.4
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 3.0e-56 222.2 173 77.5
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 3.9e-56 221.9 170 78.2
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 5.1e-56 221.5 169 77.5
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 9.6e-55 217.2 170 76.5
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 2.1e-54 216.1 170 80.0
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.1e-54 216.1 175 77.7
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 2.4e-53 212.6 168 74.4
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 3.1e-53 212.2 170 75.3
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 4.0e-53 211.8 168 75.6
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 6.9e-53 211.1 167 76.0
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 4.5e-52 208.4 172 75.6
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.7e-51 206.5 177 59.3
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 3.8e-51 205.3 173 73.4
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.9e-50 203.0 163 76.1
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 2.1e-49 199.5 172 74.4
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 2.7e-49 199.1 169 69.2
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 4.6e-49 198.4 166 76.5
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.8e-48 196.4 164 75.6
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 3.9e-48 195.3 165 75.8
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 5.1e-48 194.9 164 71.3
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.9e-47 193.0 173 67.1
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 2.5e-47 192.6 171 69.6
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.3e-47 191.8 166 73.5
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 7.4e-47 191.0 169 71.6
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 7.4e-47 191.0 169 71.6
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.4e-47 191.0 157 75.8
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 1.6e-46 189.9 163 74.2
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 2.8e-46 189.1 162 72.8
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 2.8e-46 189.1 162 72.8
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.8e-46 189.1 162 72.8
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 2.8e-46 189.1 238 46.2
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 3.7e-46 188.7 167 72.5
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.1e-45 185.7 168 57.7
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 4.0e-45 185.3 168 56.0
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.0e-45 185.3 168 56.0
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.0e-45 185.3 168 56.0
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.0e-45 185.3 156 75.0
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 6.9e-45 184.5 168 72.0
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.5e-44 183.3 167 71.3
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 1.5e-44 183.3 167 71.3
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.6e-44 182.6 167 71.3
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 4.5e-44 181.8 170 68.8
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 5.8e-44 181.4 153 73.9
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.8e-44 181.4 168 55.4
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 7.6e-44 181.0 169 69.2
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 7.6e-44 181.0 173 54.9
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 9.9e-44 180.6 168 56.5
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.2e-43 179.5 172 68.6
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 2.9e-43 179.1 171 70.2
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.8e-43 178.7 164 67.7
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 3.8e-43 178.7 168 54.2
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 6.4e-43 177.9 164 67.7
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 6.4e-43 177.9 164 67.7
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 6.4e-43 177.9 175 69.1
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 8.4e-43 177.6 161 70.2
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 8.4e-43 177.6 168 67.9
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.1e-42 177.2 158 69.6
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.4e-42 176.8 166 63.9
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.2e-42 175.6 174 53.4
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 4.2e-42 175.3 171 69.0
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 4.2e-42 175.3 146 73.3
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 5.5e-42 174.9 166 54.8
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 5.5e-42 174.9 165 70.3
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 5.5e-42 174.9 167 66.5
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 5.5e-42 174.9 175 66.3
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 7.1e-42 174.5 174 52.9
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-41 173.7 171 53.8
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.2e-41 173.7 168 53.6
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 1.6e-41 173.3 166 66.3
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 2.1e-41 172.9 177 52.5
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.1e-41 172.9 171 66.7
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 4.6e-41 171.8 160 55.0
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.3e-40 170.2 148 58.1
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.8e-40 169.9 165 67.9
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 2.3e-40 169.5 162 71.0
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 2.3e-40 169.5 162 71.0
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 2.3e-40 169.5 174 66.1
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 5.1e-40 168.3 164 68.3
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 5.1e-40 168.3 166 52.4
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 1.9e-39 166.4 170 65.9
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.9e-39 166.4 172 66.9
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.9e-39 166.4 144 71.5
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 2.5e-39 166.0 161 64.6
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.3e-38 163.7 171 59.1
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 1.3e-38 163.7 166 60.2
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.3e-38 163.7 163 66.9
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.6e-38 163.3 148 70.3
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.6e-38 163.3 166 65.1
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 2.1e-38 162.9 163 68.7
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 2.8e-38 162.5 174 63.2
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 4.8e-38 161.8 175 64.6
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 4.8e-38 161.8 175 64.6
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.8e-37 159.8 170 64.1
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.4e-37 159.5 173 49.1
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.4e-37 159.5 170 62.4
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 4.0e-37 158.7 171 61.4
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 4.0e-37 158.7 168 63.7
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 4.0e-37 158.7 170 60.6
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 4.0e-37 158.7 157 65.6
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.3e-37 158.3 170 61.2
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 9.0e-37 157.5 170 60.6
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.2e-36 157.1 165 63.6
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 1.5e-36 156.8 165 66.1
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 2.0e-36 156.4 173 49.1
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.6e-36 156.0 170 60.0
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 7.6e-36 154.5 167 49.7
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.0e-35 154.1 161 63.4
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 1.3e-35 153.7 160 63.1
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 1.7e-35 153.3 164 64.0
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.7e-35 153.3 177 62.1
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.7e-35 153.3 172 59.9
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.9e-35 152.5 152 64.5
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 6.5e-35 151.4 166 49.4
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 150 67.3
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 150 67.3
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.4e-34 150.2 79 83.5
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.9e-34 149.8 148 56.1
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.5e-34 149.4 167 62.9
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 2.5e-34 149.4 173 59.5
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 4.6e-33 145.2 163 63.8
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 6.0e-33 144.8 164 62.8
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 6.0e-33 144.8 162 61.1
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 1.0e-32 144.1 158 47.5
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 2.3e-32 142.9 164 62.2
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 3.0e-32 142.5 165 62.4
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 3.0e-32 142.5 145 58.6
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 8.7e-32 141.0 157 66.2
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 3.3e-31 139.0 163 61.3
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 3.3e-31 139.0 163 60.7
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 4.3e-31 138.7 163 60.7
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 4.3e-31 138.7 163 60.7
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 9.7e-31 137.5 168 60.7
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 1.6e-30 136.7 154 63.0
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 1.2e-28 130.6 171 55.6
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 7.6e-28 127.9 107 53.3
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 1.4e-26 123.6 78 70.5
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 4.6e-25 118.6 125 64.8
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 3.0e-24 115.9 129 47.3
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.9e-23 113.2 104 73.1
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.7e-22 110.2 66 72.7
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.1e-21 107.5 127 47.2
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 2.0e-20 103.2 132 45.5
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 8.5e-19 97.8 101 77.2
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 4.2e-18 95.5 111 43.2
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 2.1e-17 93.2 100 72.0
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 2.7e-17 92.8 121 42.1
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 1.1e-15 87.4 148 35.1
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 4.4e-15 85.5 60 63.3


User provided reference genes

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