Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 9.8e-73 276.9 165 100.0
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 3.1e-42 175.6 165 55.8
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 7.1e-39 164.5 166 54.2
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 2.5e-36 156.0 168 57.7
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 3.3e-36 155.6 167 51.5
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 7.3e-36 154.5 167 51.5
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 2.8e-35 152.5 165 49.7
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 2.8e-35 152.5 193 58.5
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 2.8e-35 152.5 166 60.2
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 1.1e-34 150.6 166 50.0
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 1.1e-34 150.6 167 50.3
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 3.1e-34 149.1 194 58.8
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 3.1e-34 149.1 168 50.6
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 5.2e-34 148.3 166 56.6
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.7e-32 143.3 121 60.3
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.9e-32 142.5 167 49.7
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 4.9e-32 141.7 174 58.0
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 6.4e-32 141.4 166 47.0
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 6.4e-32 141.4 166 47.0
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 6.4e-32 141.4 164 54.9
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 8.4e-32 141.0 166 53.6
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 1.4e-31 140.2 167 49.7
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 3.2e-31 139.0 169 45.6
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 3.2e-31 139.0 166 47.6
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 7.1e-31 137.9 166 47.6
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 9.3e-31 137.5 114 61.4
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.2e-30 137.1 166 47.6
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.6e-30 136.7 166 47.0
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.6e-30 136.7 166 47.0
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 2.1e-30 136.3 166 46.4
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 3.5e-30 135.6 120 62.5
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 3.5e-30 135.6 114 61.4
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 4.6e-30 135.2 166 45.8
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 4.6e-30 135.2 166 50.0
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 4.6e-30 135.2 166 50.0
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 7.8e-30 134.4 166 53.0
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 1.0e-29 134.0 170 51.8
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 2.3e-29 132.9 166 45.2
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 5.1e-29 131.7 170 45.9
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 6.6e-29 131.3 167 48.5
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.1e-28 130.6 167 46.1
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.5e-28 130.2 166 48.8
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.9e-28 129.8 122 53.3
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 1.9e-28 129.8 166 44.0
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 2.5e-28 129.4 166 44.6
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 2.5e-28 129.4 166 45.8
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 3.3e-28 129.0 163 45.4
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 5.6e-28 128.3 114 57.0
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 1.3e-27 127.1 167 43.7
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 1.6e-27 126.7 201 43.3
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.6e-27 126.7 114 57.9
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 2.1e-27 126.3 115 56.5
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 2.1e-27 126.3 114 55.3
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 2.8e-27 125.9 169 43.8
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.8e-27 125.9 123 51.2
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.8e-27 125.9 123 51.2
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 4.8e-27 125.2 119 58.0
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 4.8e-27 125.2 114 59.6
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 4.8e-27 125.2 114 55.3
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 6.2e-27 124.8 114 59.6
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 8.1e-27 124.4 167 44.3
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 8.1e-27 124.4 169 43.2
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 8.1e-27 124.4 117 57.3
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.1e-26 124.0 172 44.8
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 1.4e-26 123.6 167 43.7
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 2.4e-26 122.9 178 42.7
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 2.4e-26 122.9 114 55.3
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 3.1e-26 122.5 114 57.9
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.1e-26 122.5 114 57.9
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 3.1e-26 122.5 114 57.9
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 5.3e-26 121.7 166 49.4
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 5.3e-26 121.7 166 49.4
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 5.3e-26 121.7 114 54.4
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 5.3e-26 121.7 114 57.9
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 6.9e-26 121.3 178 42.1
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 6.9e-26 121.3 166 42.8
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.2e-25 120.6 174 42.5
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.2e-25 120.6 117 52.1
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 1.5e-25 120.2 178 42.1
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 1.5e-25 120.2 114 54.4
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.5e-25 120.2 114 57.9
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 2.6e-25 119.4 163 42.3
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 3.4e-25 119.0 110 54.5
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 4.5e-25 118.6 119 54.6
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 1.3e-24 117.1 112 56.2
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 2.2e-24 116.3 115 57.4
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 2.2e-24 116.3 114 52.6
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 2.2e-24 116.3 114 53.5
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 3.8e-24 115.5 166 40.4
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 3.8e-24 115.5 114 56.1
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 4.9e-24 115.2 175 40.0
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 6.4e-24 114.8 178 41.0
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 8.4e-24 114.4 247 37.7
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.4e-23 113.6 167 52.1
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.4e-23 113.6 173 44.5
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.4e-23 113.6 114 55.3
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 1.9e-23 113.2 228 39.9
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.9e-23 113.2 112 57.1
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 2.4e-23 112.8 113 54.9
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 3.2e-23 112.5 118 51.7
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 3.2e-23 112.5 103 57.3
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 4.2e-23 112.1 114 50.9
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 5.4e-23 111.7 112 50.9
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.6e-22 110.2 167 43.7
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.5e-22 109.0 112 55.4
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 4.6e-22 108.6 83 66.3
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 6.0e-22 108.2 225 43.1
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.3e-21 107.1 170 42.9
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 1.8e-21 106.7 100 58.0
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 2.3e-21 106.3 112 50.0
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.3e-21 106.3 141 41.8
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.5e-20 103.6 173 42.2
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.9e-20 103.2 166 38.6
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 2.5e-20 102.8 112 52.7
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 3.3e-20 102.4 115 47.0
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 1.3e-19 100.5 168 43.5
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 1.6e-19 100.1 162 38.3
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.8e-19 99.4 168 51.2
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 4.8e-19 98.6 203 33.5
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 6.2e-19 98.2 97 59.8
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 6.9e-18 94.7 118 46.6
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 1.5e-17 93.6 99 48.5
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 2.6e-17 92.8 108 48.1
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.4e-17 92.4 81 61.7
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 4.5e-17 92.0 158 40.5
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 4.5e-17 92.0 158 38.6
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 5.8e-17 91.7 158 40.5
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 9.9e-17 90.9 112 47.3
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 1.3e-16 90.5 158 40.5
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 1.3e-16 90.5 158 40.5
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.3e-16 90.5 157 38.9
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.9e-16 89.4 157 37.6
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 3.8e-16 89.0 102 47.1
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 4.9e-16 88.6 157 40.1
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 4.9e-16 88.6 82 56.1
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 4.9e-16 88.6 159 37.1
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.1e-15 87.4 158 40.5
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 2.4e-15 86.3 81 54.3
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 3.2e-15 85.9 158 39.9
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 3.2e-15 85.9 158 39.9
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 3.2e-15 85.9 158 39.2
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 4.2e-15 85.5 158 39.2
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 5.5e-15 85.1 162 37.0
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 7.1e-15 84.7 158 39.9
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 9.3e-15 84.3 160 45.6
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 4.6e-14 82.0 105 47.6
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 5.1e-13 78.6 90 43.3
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 6.7e-13 78.2 85 51.8
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 5.6e-12 75.1 62 58.1
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 9.6e-12 74.3 97 40.2
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 4.8e-11 72.0 112 42.0
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 2.5e-07 59.7 45 62.2
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 6.0e-06 55.1 29 79.3


User provided reference genes

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