Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02384 Aquilegia oxysepala HOM05D004120 ORTHO05D004951 1.3e-213 746.1 382 100.0
Nn6g33597 Nelumbo nucifera HOM05D004120 ORTHO05D004951 3.2e-151 538.9 383 75.7
TAR629G2715 Trochodendron aralioides HOM05D004120 ORTHO05D004951 1.2e-150 537.0 383 76.5
Nn1g00518 Nelumbo nucifera HOM05D004120 ORTHO05D004951 7.4e-148 527.7 382 74.9
Ciclev10031866m.g Citrus clementina HOM05D004120 ORTHO05D004951 2.8e-147 525.8 376 73.4
COL.COLO4_17048 Corchorus olitorius HOM05D004120 ORTHO05D004951 1.4e-146 523.5 329 81.8
Thecc.03G228600 Theobroma cacao HOM05D004120 ORTHO05D004951 1.0e-144 517.3 364 75.0
Glyma.11G043400 Glycine max HOM05D004120 ORTHO05D004951 3.8e-144 515.4 375 73.1
GSVIVG01013166001 Vitis vinifera HOM05D004120 ORTHO05D004951 3.8e-144 515.4 386 72.5
CiPaw.11G092700 Carya illinoinensis HOM05D004120 ORTHO05D004951 4.9e-144 515.0 368 75.0
Cfa012429 Carpinus fangiana HOM05D004120 ORTHO05D004951 1.4e-143 513.5 372 73.4
QL12p005624 Quercus lobata HOM05D004120 ORTHO05D004951 2.5e-143 512.7 367 74.7
Dinv25212 Davidia involucrata HOM05D004120 ORTHO05D004951 3.2e-143 512.3 388 72.7
Duzib084G1060 Durio zibethinus HOM05D004120 ORTHO05D004951 3.2e-143 512.3 362 74.6
Potri.001G143400 Populus trichocarpa HOM05D004120 ORTHO05D004951 4.2e-143 511.9 388 71.1
PGR031G2717 Punica granatum HOM05D004120 ORTHO05D004951 5.5e-143 511.5 332 78.6
Hma1.2p1_0585F.1_g183700 Hydrangea macrophylla HOM05D004120 ORTHO05D004951 2.1e-142 509.6 382 71.7
MD00G1220600 Malus domestica HOM05D004120 ORTHO05D004951 3.5e-142 508.8 366 72.4
CiPaw.12G063200 Carya illinoinensis HOM05D004120 ORTHO05D004951 4.6e-142 508.4 372 73.4
Eucgr.D02191 Eucalyptus grandis HOM05D004120 ORTHO05D004951 7.9e-142 507.7 328 80.2
VMungo1215G0016 Vigna mungo HOM05D004120 ORTHO05D004951 7.9e-142 507.7 377 72.9
Phvul.002G007300 Phaseolus vulgaris HOM05D004120 ORTHO05D004951 2.3e-141 506.1 376 71.8
CANSAT21G2618 Cannabis sativa HOM05D004120 ORTHO05D004951 3.0e-141 505.8 342 75.7
Gohir.A08G156900 Gossypium hirsutum HOM05D004120 ORTHO05D004951 6.7e-141 504.6 329 78.7
TWI81G0459 Tripterygium wilfordii HOM05D004120 ORTHO05D004951 2.5e-140 502.7 366 73.0
Gohir.D08G177300 Gossypium hirsutum HOM05D004120 ORTHO05D004951 3.3e-140 502.3 382 71.7
arahy.Tifrunner.gnm1.ann1.482M5A Arachis hypogaea HOM05D004120 ORTHO05D004951 4.3e-140 501.9 375 72.5
arahy.Tifrunner.gnm1.ann1.G7H05W Arachis hypogaea HOM05D004120 ORTHO05D004951 4.3e-140 501.9 375 72.5
EL10Ac5g12129 Beta vulgaris HOM05D004120 ORTHO05D004951 7.4e-140 501.1 365 72.6
FAN04G1856 Fragaria x ananassa HOM05D004120 ORTHO05D004951 9.6e-140 500.7 370 73.5
Manes.17G013200 Manihot esculenta HOM05D004120 ORTHO05D004951 1.6e-139 500.0 352 74.4
Cpa.g.sc239.7 Carica papaya HOM05D004120 ORTHO05D004951 2.1e-139 499.6 351 74.6
Sopen08g001030 Solanum pennellii HOM05D004120 ORTHO05D004951 2.1e-139 499.6 381 71.7
Lsat_1_v5_gn_6_79560 Lactuca sativa HOM05D004120 ORTHO05D004951 2.8e-139 499.2 385 70.1
ClCG10G001730 Citrullus lanatus HOM05D004120 ORTHO05D004951 3.7e-139 498.8 327 78.0
PSO063G1634 Papaver somniferum HOM05D004120 ORTHO05D004951 3.7e-139 498.8 351 74.9
AUR62018721 Chenopodium quinoa HOM05D004120 ORTHO05D004951 4.8e-139 498.4 372 71.5
Lalb_Chr05g0213941 Lupinus albus HOM05D004120 ORTHO05D004951 4.8e-139 498.4 372 71.0
PSO782G3668 Papaver somniferum HOM05D004120 ORTHO05D004951 6.2e-139 498.0 366 72.1
Lalb_Chr16g0379111 Lupinus albus HOM05D004120 ORTHO05D004951 8.2e-139 497.7 378 69.8
PGSC0003DMG402001159 Solanum tuberosum HOM05D004120 ORTHO05D004951 1.1e-138 497.3 381 70.6
CSS0046330 Camellia sinensis var. sinensis HOM05D004120 ORTHO05D004951 1.4e-138 496.9 380 70.3
FvH4_5g21880 Fragaria vesca HOM05D004120 ORTHO05D004951 1.4e-138 496.9 370 72.4
Prupe.5G038500 Prunus persica HOM05D004120 ORTHO05D004951 1.8e-138 496.5 378 70.6
CsaV3_3G001840 Cucumis sativus L. HOM05D004120 ORTHO05D004951 2.4e-138 496.1 329 77.2
FAN18G3415 Fragaria x ananassa HOM05D004120 ORTHO05D004951 3.1e-138 495.7 370 72.2
Sc01g0007480 Simmondsia chinensis HOM05D004120 ORTHO05D004951 4.0e-138 495.4 332 77.1
ECA240G4620 Erigeron canadensis HOM05D004120 ORTHO05D004951 5.3e-138 495.0 383 70.0
Gorai.004G185700 Gossypium raimondii HOM05D004120 ORTHO05D004951 5.3e-138 495.0 346 75.4
Cc08_g02620 Coffea canephora HOM05D004120 ORTHO05D004951 9.0e-138 494.2 381 69.3
Sed0006792 Sechium edule HOM05D004120 ORTHO05D004951 1.5e-137 493.4 328 76.2
MELO3C013859.2 Cucumis melo HOM05D004120 ORTHO05D004951 2.0e-137 493.0 327 77.4
Dinv28953 Davidia involucrata HOM05D004120 ORTHO05D004951 2.6e-137 492.7 378 70.4
MSTRG.13757 Avicennia marina HOM05D004120 ORTHO05D004951 3.4e-137 492.3 340 74.7
Ca_24652_v3 Cicer arietinum L. HOM05D004120 ORTHO05D004951 3.4e-137 492.3 370 72.2
DCAR_008274 Daucus carota HOM05D004120 ORTHO05D004951 3.4e-137 492.3 378 68.0
CAN.G1216.15 Capsicum annuum HOM05D004120 ORTHO05D004951 4.5e-137 491.9 378 70.4
Sabra01G0111800 Salix brachista HOM05D004120 ORTHO05D004951 5.8e-137 491.5 420 65.2
CDE03G0015 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.0e-136 490.7 382 68.8
Lj2g0014948 Lotus japonicus HOM05D004120 ORTHO05D004951 2.9e-136 489.2 371 70.4
Hund14402 Selenicereus undatus HOM05D004120 ORTHO05D004951 5.0e-136 488.4 380 69.7
TPR.G7833 Trifolium pratense HOM05D004120 ORTHO05D004951 1.4e-135 486.9 371 71.2
Medtr5g014430 Medicago truncatula HOM05D004120 ORTHO05D004951 4.2e-135 485.3 372 70.7
Oeu028027.1 Olea europaea HOM05D004120 ORTHO05D004951 9.3e-135 484.2 382 68.8
HanXRQChr03g0084021 Helianthus annuus HOM05D004120 ORTHO05D004951 1.6e-134 483.4 373 68.6
Oeu053047.1 Olea europaea HOM05D004120 ORTHO05D004951 3.5e-134 482.3 378 69.6
CARHR129420 Cardamine hirsuta HOM05D004120 ORTHO05D004951 7.9e-134 481.1 371 69.0
RcHm_v2.0_Chr7g0209431 Rosa chinensis HOM05D004120 ORTHO05D004951 1.0e-133 480.7 368 70.1
Migut.E00930 Erythranthe guttata HOM05D004120 ORTHO05D004951 1.8e-133 479.9 338 73.4
Rhsim11G0014500 Rhododendron simsii HOM05D004120 ORTHO05D004951 3.0e-133 479.2 389 68.1
AL4G31300 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 6.7e-133 478.0 370 68.6
ATR0049G040 Amborella trichopoda HOM05D004120 ORTHO05D004951 1.1e-132 477.2 337 73.3
A03p19500 Brassica napus HOM05D004120 ORTHO05D004951 4.3e-132 475.3 377 66.8
Carub.0004s1696 Capsella rubella HOM05D004120 ORTHO05D004951 7.4e-132 474.6 378 66.1
THA.LOC104807951 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 9.7e-132 474.2 304 77.0
BcaB02g09465 Brassica carinata HOM05D004120 ORTHO05D004951 2.8e-131 472.6 377 67.1
BraA03t11203Z Brassica rapa HOM05D004120 ORTHO05D004951 3.7e-131 472.2 377 66.6
Ah.12g054990 Amaranthus hybridus HOM05D004120 ORTHO05D004951 4.8e-131 471.9 375 68.5
Thhalv10016805m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 4.8e-131 471.9 375 67.5
BcaC01g05734 Brassica carinata HOM05D004120 ORTHO05D004951 6.3e-131 471.5 372 67.5
AT2G35260 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 8.2e-131 471.1 375 67.2
C03p22720 Brassica napus HOM05D004120 ORTHO05D004951 8.2e-131 471.1 376 66.5
BolC3t14671H Brassica oleracea HOM05D004120 ORTHO05D004951 5.3e-130 468.4 372 67.2
Sp4g17480 Schrenkiella parvula HOM05D004120 ORTHO05D004951 9.0e-130 467.6 374 66.3
BraA05t19989Z Brassica rapa HOM05D004120 ORTHO05D004951 2.0e-129 466.5 355 69.6
BolC4t22936H Brassica oleracea HOM05D004120 ORTHO05D004951 4.5e-129 465.3 375 65.9
A05p10510 Brassica napus HOM05D004120 ORTHO05D004951 5.9e-129 464.9 374 66.6
THA.LOC104798329 Tarenaya hassleriana HOM05D004120 ORTHO05D004951 7.7e-129 464.5 366 67.8
BcaC02g11630 Brassica carinata HOM05D004120 ORTHO05D004951 1.0e-128 464.2 375 65.6
C04p12920 Brassica napus HOM05D004120 ORTHO05D004951 1.0e-128 464.2 375 65.6
unitig_52.g17209 Utricularia gibba HOM05D004120 ORTHO05D004951 1.3e-128 463.8 333 69.7
unitig_699.g19781 Utricularia gibba HOM05D004120 ORTHO05D004951 3.8e-128 462.2 309 75.4
HPP92_022143 Vanilla planifolia HOM05D004120 ORTHO05D004951 3.8e-128 462.2 313 74.4
HPP92_022140 Vanilla planifolia HOM05D004120 ORTHO05D004951 8.5e-128 461.1 313 74.1
ECA246G0968 Erigeron canadensis HOM05D004120 ORTHO05D004951 7.2e-127 458.0 359 67.1
Zm00001eb426630 Zea mays HOM05D004120 ORTHO05D004951 3.6e-126 455.7 341 68.6
vmacro00332 Vaccinium macrocarpon HOM05D004120 ORTHO05D004951 6.1e-126 454.9 441 59.0
Peaxi162Scf00045g00028 Petunia axillaris HOM05D004120 ORTHO05D004951 1.8e-125 453.4 368 67.4
AUR62007285 Chenopodium quinoa HOM05D004120 ORTHO05D004951 3.0e-125 452.6 369 68.3
Os03g0100030 Oryza sativa ssp. japonica HOM05D004120 ORTHO05D004951 3.9e-125 452.2 287 76.7
C07p49190 Brassica napus HOM05D004120 ORTHO05D004951 6.7e-125 451.4 360 66.7
Carub.0007s2352 Capsella rubella HOM05D004120 ORTHO05D004951 2.5e-124 449.5 401 61.3
Aa31LG6G560 Aethionema arabicum HOM05D004120 ORTHO05D004951 7.4e-124 448.0 392 62.5
AL716U10010 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 4.8e-123 445.3 370 65.4
SGA_v2.0_scaffold54G19447 Striga asiatica HOM05D004120 ORTHO05D004951 6.3e-123 444.9 378 62.2
Thhalv10025287m.g Eutrema salsugineum HOM05D004120 ORTHO05D004951 1.4e-122 443.7 374 63.9
Glyma.01G198500 Glycine max HOM05D004120 ORTHO05D004951 2.4e-122 443.0 331 71.6
Sp7g16270 Schrenkiella parvula HOM05D004120 ORTHO05D004951 4.1e-122 442.2 282 76.2
Psat2g173200 Pisum sativum HOM05D004120 ORTHO05D004951 5.3e-122 441.8 371 65.8
BcaNung00052 Brassica carinata HOM05D004120 ORTHO05D004951 6.9e-122 441.4 278 78.4
A03p50800 Brassica napus HOM05D004120 ORTHO05D004951 1.5e-121 440.3 283 77.0
BraA03t14169Z Brassica rapa HOM05D004120 ORTHO05D004951 1.5e-121 440.3 283 77.0
CARHR224560 Cardamine hirsuta HOM05D004120 ORTHO05D004951 1.5e-121 440.3 282 75.9
AT4G17840 Arabidopsis thaliana HOM05D004120 ORTHO05D004951 4.5e-121 438.7 372 62.6
BcaC09g51598 Brassica carinata HOM05D004120 ORTHO05D004951 2.2e-120 436.4 277 76.9
C01p11590 Brassica napus HOM05D004120 ORTHO05D004951 2.2e-120 436.4 277 76.9
BolC1t01127H Brassica oleracea HOM05D004120 ORTHO05D004951 2.2e-120 436.4 277 76.9
BraA01t00933Z Brassica rapa HOM05D004120 ORTHO05D004951 2.2e-120 436.4 277 76.9
A01p09890 Brassica napus HOM05D004120 ORTHO05D004951 1.1e-119 434.1 353 64.9
AL7G36690 Arabidopsis lyrata HOM05D004120 ORTHO05D004951 1.2e-118 430.6 398 58.8
Solyc08g005010.4 Solanum lycopersicum HOM05D004120 ORTHO05D004951 1.0e-117 427.6 335 71.0
Aa31LG9G15290 Aethionema arabicum HOM05D004120 ORTHO05D004951 5.1e-117 425.2 414 58.5
BolC7t45429H Brassica oleracea HOM05D004120 ORTHO05D004951 1.0e-112 411.0 324 68.2
SEGI_24472 Sequoiadendron giganteum HOM05D004120 ORTHO05D004951 9.4e-111 404.4 323 65.0
MD06G1033000 Malus domestica HOM05D004120 ORTHO05D004951 8.0e-110 401.4 269 77.0
Atru.chr6.1717 Acer truncatum HOM05D004120 ORTHO05D004951 8.2e-107 391.3 306 70.9
Nitab4.5_0000804g0170 Nicotiana tabacum HOM05D004120 ORTHO05D004951 8.8e-101 371.3 212 85.8
Duzib205G1837 Durio zibethinus HOM05D004120 ORTHO05D004951 6.3e-99 365.2 301 68.4
Haze_08240 Corylus avellana HOM05D004120 ORTHO05D004951 2.7e-97 359.8 328 64.3
Actinidia28172 Actinidia chinensis HOM05D004120 ORTHO05D004951 3.1e-90 336.3 190 88.4
Mapoly0008s0099 Marchantia polymorpha HOM05D004120 ORTHO05D004951 1.1e-87 327.8 287 56.8
FAN13G1981 Fragaria x ananassa HOM05D004120 ORTHO05D004951 1.9e-87 327.0 272 68.4
FAN08G2335 Fragaria x ananassa HOM05D004120 ORTHO05D004951 7.2e-87 325.1 272 68.4
Pp3c10_10980 Physcomitrium patens HOM05D004120 ORTHO05D004951 2.3e-85 320.1 294 55.4
Pp3c14_25270 Physcomitrium patens HOM05D004120 ORTHO05D004951 6.8e-85 318.5 273 58.2
unitig_744.g24311 Utricularia gibba HOM05D004120 ORTHO05D004951 7.8e-81 305.1 288 57.6
Nitab4.5_0002539g0020 Nicotiana tabacum HOM05D004120 ORTHO05D004951 5.8e-76 288.9 265 63.4
SMO356G0344 Selaginella moellendorffii HOM05D004120 ORTHO05D004951 8.9e-69 265.0 255 50.6
Actinidia25961 Actinidia chinensis HOM05D004120 ORTHO05D004951 7.1e-66 255.4 262 59.2
CDE06G0385 Ceratophyllum demersum HOM05D004120 ORTHO05D004951 1.9e-63 247.3 245 58.8
arahy.Tifrunner.gnm1.ann1.K2V32T Arachis hypogaea HOM05D004120 ORTHO05D004951 3.4e-60 236.5 178 68.5
arahy.Tifrunner.gnm1.ann1.7CR4HZ Arachis hypogaea HOM05D004120 ORTHO05D004951 9.9e-60 235.0 178 68.5
arahy.Tifrunner.gnm1.ann1.WRTU1C Arachis hypogaea HOM05D004120 ORTHO05D004951 2.4e-58 230.3 178 67.4
arahy.Tifrunner.gnm1.ann1.3C7WBJ Arachis hypogaea HOM05D004120 ORTHO05D004951 5.4e-58 229.2 153 75.8
HanXRQChr05g0153901 Helianthus annuus HOM05D004120 ORTHO05D004951 3.5e-57 226.5 162 74.7
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 5.1e-40 169.5 157 54.1
arahy.Tifrunner.gnm1.ann1.B3D4NA Arachis hypogaea HOM05D004120 ORTHO05D004951 5.1e-40 169.5 114 72.8
arahy.Tifrunner.gnm1.ann1.4R7L3N Arachis hypogaea HOM05D004120 ORTHO05D004951 1.9e-39 167.5 102 78.4
arahy.Tifrunner.gnm1.ann1.AE9Z3E Arachis hypogaea HOM05D004120 ORTHO05D004951 1.9e-39 167.5 115 71.3
arahy.Tifrunner.gnm1.ann1.RCE8PR Arachis hypogaea HOM05D004120 ORTHO05D004951 7.6e-36 155.6 131 65.6
arahy.Tifrunner.gnm1.ann1.E125G1 Arachis hypogaea HOM05D004120 ORTHO05D004951 5.3e-29 132.9 76 80.3
arahy.Tifrunner.gnm1.ann1.BQ9W36 Arachis hypogaea HOM05D004120 ORTHO05D004951 3.4e-28 130.2 76 77.6
arahy.Tifrunner.gnm1.ann1.U1DJ88 Arachis hypogaea HOM05D004120 ORTHO05D007788 1.0e-27 128.6 79 77.2
Aa31sc618G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 3.8e-27 126.7 103 67.0
CBR_g56906 Chara braunii HOM05D004120 ORTHO05D004951 3.2e-26 123.6 114 48.2
arahy.Tifrunner.gnm1.ann1.H82JQN Arachis hypogaea HOM05D004120 ORTHO05D021518 7.9e-25 119.0 88 67.0
arahy.Tifrunner.gnm1.ann1.L0EJKI Arachis hypogaea HOM05D004120 ORTHO05D004951 3.9e-24 116.7 75 72.0
AagrBONN_evm.TU.Sc2ySwM_117.3803 Anthoceros agrestis HOM05D004120 ORTHO05D004951 1.9e-23 114.4 161 41.6
EL10Ac1g01819 Beta vulgaris HOM05D004120 ORTHO05D023811 2.0e-20 104.4 53 90.6
RcHm_v2.0_Chr6g0284251 Rosa chinensis HOM05D004120 ORTHO05D004951 5.9e-20 102.8 75 65.3
arahy.Tifrunner.gnm1.ann1.JI8VIY Arachis hypogaea HOM05D004120 ORTHO05D021518 1.0e-19 102.1 57 89.5
arahy.Tifrunner.gnm1.ann1.NR0HVE Arachis hypogaea HOM05D004120 ORTHO05D021518 3.2e-18 97.1 57 87.7
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 3.5e-17 93.6 55 80.0
CBR_g19263 Chara braunii HOM05D004120 ORTHO05D004951 4.6e-17 93.2 140 38.6
CAN.G36.13 Capsicum annuum HOM05D004120 ORTHO05D004951 9.7e-15 85.5 60 70.0
CAN.G399.4 Capsicum annuum HOM05D004120 ORTHO05D004951 2.2e-14 84.3 55 78.2
Aa31sc185G30 Aethionema arabicum HOM05D004120 ORTHO05D004951 2.0e-07 61.2 128 38.3
A01p32880 Brassica napus HOM05D004120 ORTHO05D023811 9.7e-07 58.9 28 96.4
A06p35780 Brassica napus HOM05D004120 ORTHO05D023811 9.7e-07 58.9 28 96.4
BraA01t03409Z Brassica rapa HOM05D004120 ORTHO05D023811 9.7e-07 58.9 28 96.4


User provided reference genes

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