Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 6.1e-263 910.2 442 100.0
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.6e-229 798.5 442 85.1
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.6e-226 789.3 437 84.7
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 6.0e-226 787.3 437 84.0
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 5.6e-224 780.8 439 83.6
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 4.7e-223 777.7 439 82.2
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 1.4e-222 776.2 437 82.4
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 3.1e-222 775.0 439 82.0
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 5.2e-222 774.2 439 82.0
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 8.9e-222 773.5 437 82.8
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 5.8e-221 770.8 439 82.2
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 7.5e-221 770.4 452 80.8
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.3e-220 769.6 435 81.4
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.7e-220 769.2 439 80.6
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 2.2e-220 768.8 437 81.9
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 3.7e-220 768.1 437 81.9
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 6.4e-220 767.3 439 81.1
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 8.3e-220 766.9 439 80.9
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 8.3e-220 766.9 439 81.5
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 8.3e-220 766.9 437 80.8
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.4e-219 766.1 436 81.9
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.4e-219 766.1 436 81.9
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.2e-219 765.0 439 81.1
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 4.1e-219 764.6 439 81.8
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 4.1e-219 764.6 439 80.9
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 5.4e-219 764.2 437 81.7
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 5.4e-219 764.2 438 81.3
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 5.4e-219 764.2 439 80.4
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.6e-218 762.7 437 81.0
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.6e-218 762.7 437 81.0
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 2.7e-218 761.9 437 81.2
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.7e-218 761.9 437 81.2
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 3.5e-218 761.5 437 81.2
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 4.6e-218 761.1 437 80.8
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 6.0e-218 760.8 439 81.1
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 6.0e-218 760.8 435 80.7
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 7.8e-218 760.4 435 80.5
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.0e-217 760.0 437 80.1
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 2.3e-217 758.8 439 80.2
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 2.3e-217 758.8 438 80.6
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 5.1e-217 757.7 439 80.4
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 6.6e-217 757.3 432 81.5
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 8.6e-217 756.9 432 80.8
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 8.6e-217 756.9 440 80.0
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 8.6e-217 756.9 437 80.8
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 1.9e-216 755.7 437 79.9
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 3.3e-216 755.0 494 73.3
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 9.5e-216 753.4 435 80.9
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.2e-215 753.1 437 79.9
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.6e-215 752.7 437 78.9
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.8e-215 751.9 437 80.3
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 3.6e-215 751.5 437 79.2
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 4.7e-215 751.1 437 81.0
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 4.7e-215 751.1 437 79.9
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 4.7e-215 751.1 437 79.9
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 6.2e-215 750.7 439 79.0
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 6.2e-215 750.7 433 80.4
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 6.2e-215 750.7 435 80.0
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 8.1e-215 750.4 438 79.5
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 8.1e-215 750.4 436 78.7
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 1.1e-214 750.0 437 78.5
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.4e-214 749.6 433 80.1
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.1e-214 748.4 438 78.8
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 6.8e-214 747.3 447 78.7
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 8.9e-214 746.9 436 79.4
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 8.9e-214 746.9 430 80.0
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.2e-213 746.5 433 79.9
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 1.5e-213 746.1 436 78.4
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.4e-213 745.0 433 79.7
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 4.4e-213 744.6 435 78.6
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 6.4e-212 740.7 438 79.2
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.4e-211 739.6 439 79.5
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 9.2e-211 736.9 439 77.0
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.0e-209 733.4 428 79.9
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 2.3e-209 732.3 434 78.3
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.6e-207 726.1 508 69.5
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 6.2e-207 724.2 437 76.9
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 3.1e-206 721.8 433 76.7
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 6.9e-206 720.7 439 76.8
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 1.2e-205 719.9 439 75.2
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.2e-205 719.9 446 75.6
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 4.4e-205 718.0 439 77.0
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.3e-204 716.5 421 81.5
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.1e-203 713.4 473 71.0
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 2.4e-203 712.2 413 80.9
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 3.0e-201 705.3 441 75.3
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 3.0e-201 705.3 523 66.7
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 6.6e-201 704.1 418 79.2
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.6e-199 698.4 426 76.8
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 3.6e-199 698.4 435 75.6
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.1e-198 696.8 437 74.8
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 2.6e-197 692.2 442 73.5
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 3.8e-196 688.3 392 82.1
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 1.1e-195 686.8 408 78.7
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 2.4e-195 685.6 435 73.3
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.6e-194 682.9 435 73.1
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.1e-192 676.8 436 72.9
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 4.8e-191 671.4 403 76.9
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.8e-190 669.5 436 75.7
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 6.9e-190 667.5 426 71.1
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 4.5e-189 664.8 441 69.4
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 4.5e-189 664.8 437 72.1
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 6.4e-188 661.0 435 71.7
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 9.6e-184 647.1 441 67.3
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.8e-182 642.9 434 67.3
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 2.6e-181 639.0 426 70.4
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.1e-178 629.4 439 66.5
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 1.7e-172 609.8 341 83.0
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 9.4e-171 604.0 448 62.9
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.6e-170 603.2 331 84.0
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.4e-169 600.1 342 80.7
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 2.0e-168 596.3 339 81.7
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 3.7e-167 592.0 358 78.2
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.4e-165 585.5 444 62.2
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 8.5e-164 580.9 444 61.7
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.4e-163 580.1 391 72.1
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 3.6e-162 575.5 426 62.0
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.7e-162 575.1 440 63.0
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 8.8e-161 570.9 439 65.6
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 5.5e-147 525.0 293 81.9
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 2.1e-146 523.1 337 73.3
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.8e-145 520.0 427 58.5
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.8e-145 518.1 354 69.2
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 4.7e-138 495.4 387 63.8
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.7e-132 476.9 432 53.5
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 6.0e-109 398.7 352 58.5
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.0e-108 397.9 243 77.8
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 6.8e-105 385.2 224 79.9
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 6.6e-92 342.0 230 70.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 3.2e-78 296.6 191 72.8
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.8e-74 282.7 176 73.3
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.1e-73 280.0 157 82.8
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 6.0e-69 265.8 197 69.5
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 3.1e-65 253.4 145 82.1
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 6.7e-60 235.7 133 85.0
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.1e-57 226.5 234 54.3
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.0e-52 210.3 113 83.2
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.5e-48 198.0 107 82.2
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 2.6e-43 180.6 140 65.7
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.7e-35 152.9 93 75.3
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 9.7e-35 152.1 88 79.5
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 5.9e-32 142.9 166 47.0
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.9e-30 137.9 82 78.0
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 1.0e-28 132.1 204 37.3
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.0e-23 115.5 87 65.5
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 5.0e-23 113.2 67 71.6
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 8.0e-21 105.9 242 33.5
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 3.4e-19 100.5 63 73.0
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 7.5e-19 99.4 57 73.7
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 2.4e-17 94.4 73 57.5
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 2.0e-16 91.3 124 45.2
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.2e-11 75.5 36 83.3
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 3.4e-11 73.9 38 78.9
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 2.0e-08 64.7 46 65.2
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 1.0e-07 62.4 74 45.9
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 1.7e-07 61.6 69 50.7
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 4.3e-06 57.0 35 65.7


User provided reference genes

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