Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 2.3e-182 642.1 322 100.0
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 4.3e-133 478.4 324 70.4
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 7.4e-133 477.6 323 71.2
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 1.8e-131 473.0 324 70.1
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 3.4e-130 468.8 324 70.7
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 1.6e-127 459.9 325 69.8
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.1e-125 453.8 324 69.1
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 1.5e-125 453.4 324 68.5
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 3.3e-125 452.2 325 68.9
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 3.3e-125 452.2 324 68.2
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 7.4e-125 451.1 325 67.1
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.8e-124 449.1 324 67.9
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 3.7e-124 448.7 324 66.4
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 6.3e-124 448.0 324 67.9
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 6.3e-124 448.0 325 68.3
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.1e-123 447.2 324 68.5
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.8e-123 446.4 326 66.6
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 3.1e-123 445.7 339 65.8
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.2e-122 443.7 331 66.8
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.5e-122 443.4 325 68.3
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 2.0e-122 443.0 324 67.0
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 3.4e-122 442.2 324 66.0
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 5.8e-122 441.4 364 59.9
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.7e-121 439.9 324 68.2
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 8.4e-121 437.6 324 65.4
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.9e-120 436.4 324 66.0
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.9e-120 436.4 324 66.0
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 7.2e-120 434.5 326 66.9
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 6.1e-119 431.4 326 67.2
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 7.9e-119 431.0 325 64.3
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.3e-118 430.3 324 65.4
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.3e-118 429.5 307 67.8
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 3.0e-118 429.1 325 64.0
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 3.9e-118 428.7 324 63.3
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 6.7e-118 427.9 324 63.3
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 8.7e-118 427.6 328 63.7
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.1e-117 427.2 324 65.4
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.5e-117 426.8 324 65.1
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.9e-117 426.4 328 64.0
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.6e-116 423.3 339 64.6
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 1.6e-116 423.3 324 63.0
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.2e-116 422.9 324 63.3
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 3.7e-116 422.2 327 63.9
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 6.3e-116 421.4 324 64.8
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 6.3e-116 421.4 324 63.0
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 6.3e-116 421.4 324 63.0
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.1e-115 418.7 324 63.0
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 9.0e-115 417.5 327 63.6
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 9.0e-115 417.5 380 56.1
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.2e-114 417.2 324 60.5
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 3.8e-113 412.1 324 63.0
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 6.5e-113 411.4 326 63.2
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 8.5e-113 411.0 322 62.7
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.4e-112 410.2 324 62.3
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 3.2e-112 409.1 307 65.1
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 5.5e-112 408.3 393 54.5
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 7.2e-112 407.9 324 62.0
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 9.4e-112 407.5 322 62.4
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 9.4e-112 407.5 324 61.1
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 6.1e-111 404.8 319 63.3
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.4e-110 403.7 325 62.2
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.8e-110 403.3 324 61.1
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 1.8e-110 403.3 325 62.5
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 2.0e-109 399.8 340 58.8
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 5.7e-109 398.3 322 59.3
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 9.7e-109 397.5 324 59.9
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 3.7e-108 395.6 323 60.4
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 1.1e-107 394.0 322 60.6
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 1.4e-107 393.7 325 61.8
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 1.2e-106 390.6 319 60.8
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 2.0e-106 389.8 327 60.6
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 3.4e-106 389.0 324 59.3
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 5.9e-106 388.3 319 62.4
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.0e-105 387.5 324 57.4
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 3.8e-105 385.6 322 58.1
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 5.0e-105 385.2 319 61.1
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 3.2e-104 382.5 323 57.6
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.2e-104 382.5 310 61.9
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.2e-104 382.1 321 61.4
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 9.4e-104 380.9 304 63.2
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.6e-103 380.2 322 61.2
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 3.6e-103 379.0 323 57.9
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 3.6e-103 379.0 323 57.9
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 3.6e-103 379.0 332 56.0
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 6.1e-103 378.3 325 57.5
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.4e-102 377.1 307 60.3
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 3.0e-102 375.9 332 55.4
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 6.7e-102 374.8 365 52.9
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.1e-101 374.0 318 60.4
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 7.4e-101 371.3 324 61.7
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 1.7e-100 370.2 328 56.4
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 2.2e-100 369.8 348 52.3
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.1e-99 367.5 320 58.4
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 7.0e-99 364.8 358 52.0
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.6e-98 363.6 327 57.5
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 1.6e-98 363.6 363 55.4
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.6e-98 363.6 320 57.5
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 7.7e-98 361.3 322 57.1
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.1e-96 357.5 327 56.3
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 1.1e-96 357.5 325 54.5
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 2.5e-96 356.3 369 50.1
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 9.4e-96 354.4 363 52.6
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 3.0e-94 349.4 322 57.1
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.1e-93 347.4 283 62.9
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 1.1e-93 347.4 330 52.1
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 4.8e-92 342.0 347 52.2
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 6.3e-92 341.7 322 55.6
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 8.2e-92 341.3 284 60.9
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 8.2e-92 341.3 249 68.7
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.1e-91 340.9 304 59.9
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.6e-90 337.0 269 61.7
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 2.0e-90 336.7 325 53.5
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 2.5e-88 329.7 324 49.7
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 7.2e-88 328.2 222 70.3
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.0e-85 320.1 235 64.3
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.6e-79 300.4 318 55.0
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.9e-76 288.9 327 52.0
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.6e-74 283.9 307 48.9
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 5.9e-74 282.0 261 58.2
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 3.3e-72 276.2 247 53.0
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 3.2e-67 259.6 294 52.0
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 3.0e-65 253.1 322 44.4
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 3.0e-65 253.1 290 49.0
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 5.0e-65 252.3 327 43.1
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 1.9e-64 250.4 208 61.1
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.2e-63 247.7 165 74.5
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 6.4e-60 235.3 211 58.3
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 6.4e-52 208.8 145 72.4
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.4e-51 206.8 165 62.4
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 7.1e-51 205.3 151 60.9
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.0e-49 201.4 256 43.0
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 3.9e-49 199.5 128 69.5
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 4.7e-47 192.6 162 56.8
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 6.8e-46 188.7 145 66.9
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.6e-45 186.8 165 59.4
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.9e-44 183.3 180 56.7
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 8.6e-41 171.8 161 50.9
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.4e-38 164.5 314 36.3
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 1.2e-37 161.4 296 35.8
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 9.3e-35 151.8 122 58.2
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.3e-33 147.9 120 55.8
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 8.7e-33 145.2 115 55.7
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 1.9e-32 144.1 213 38.0
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.3e-31 141.4 217 37.8
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 5.3e-30 136.0 322 31.4
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.6e-26 124.4 84 70.2
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 9.9e-21 105.1 95 60.0
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 3.2e-19 100.1 101 48.5
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 5.5e-19 99.4 75 58.7
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.1e-19 99.0 120 50.0
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.2e-18 98.2 75 58.7
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.2e-18 98.2 75 58.7
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.3e-17 94.0 86 59.3
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.1e-15 87.4 81 51.9
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 2.8e-15 87.0 78 50.0
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 3.4e-13 80.1 61 67.2
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 1.6e-10 71.2 56 64.3
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 3.5e-10 70.1 61 60.7
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 6.7e-09 65.9 55 63.6
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 1.8e-06 57.8 40 67.5


User provided reference genes

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