Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 6.3e-273 943.7 557 100.0
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 3.0e-134 483.0 407 67.1
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 2.4e-131 473.4 385 67.5
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 1.8e-126 457.2 399 64.4
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 9.8e-125 451.4 398 64.3
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.3e-118 430.3 410 61.7
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 2.3e-118 430.3 406 63.8
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 7.5e-117 425.2 386 63.5
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 9.8e-117 424.9 405 59.5
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 2.9e-116 423.3 427 56.4
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 4.9e-116 422.5 397 60.2
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.4e-115 421.0 384 61.7
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.7e-114 416.8 389 61.7
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 5.9e-114 415.6 397 59.9
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 1.3e-113 414.5 392 60.7
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 1.7e-113 414.1 448 55.1
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 2.3e-113 413.7 398 61.3
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 5.0e-113 412.5 378 60.1
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 1.1e-112 411.4 435 55.9
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 1.1e-112 411.4 397 57.4
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.5e-112 411.0 394 58.6
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 2.5e-112 410.2 396 56.8
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.5e-112 410.2 396 56.8
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.5e-112 410.2 396 56.8
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 3.3e-112 409.8 399 58.6
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.3e-112 409.5 396 56.6
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 5.6e-112 409.1 353 65.2
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 7.3e-112 408.7 407 58.2
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 1.2e-111 407.9 403 59.8
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.2e-111 407.9 396 56.3
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.7e-111 406.0 396 56.1
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 2.3e-110 403.7 395 59.2
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 6.8e-110 402.1 393 59.3
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 6.8e-110 402.1 393 59.3
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 2.6e-109 400.2 449 53.5
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 2.6e-109 400.2 415 56.1
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 3.4e-109 399.8 384 58.3
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 4.4e-109 399.4 401 58.6
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 4.4e-109 399.4 401 58.6
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 5.8e-109 399.1 561 45.5
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 7.5e-109 398.7 392 60.2
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 9.8e-109 398.3 401 58.4
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 1.3e-108 397.9 402 58.7
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 1.7e-108 397.5 421 56.3
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 1.4e-107 394.4 402 58.7
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 4.1e-107 392.9 400 58.2
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 4.1e-107 392.9 425 54.6
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 9.2e-107 391.7 398 57.3
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 9.2e-107 391.7 422 57.3
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.2e-106 391.3 383 60.1
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 2.7e-106 390.2 442 53.8
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.5e-106 389.8 383 59.8
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 6.0e-106 389.0 405 57.5
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 6.0e-106 389.0 411 56.0
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 7.8e-106 388.7 398 57.0
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 7.8e-106 388.7 424 53.3
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 1.0e-105 388.3 387 57.4
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.9e-105 386.3 385 58.7
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 3.9e-105 386.3 392 59.2
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 5.0e-105 386.0 403 57.1
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 5.0e-105 386.0 402 57.2
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 1.9e-104 384.0 431 53.6
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 1.9e-104 384.0 571 45.4
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 4.3e-104 382.9 368 58.7
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 7.3e-104 382.1 564 45.2
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 7.3e-104 382.1 429 53.6
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 9.5e-104 381.7 398 57.5
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 9.5e-104 381.7 395 57.2
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 1.2e-103 381.3 433 54.0
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.2e-103 381.3 393 56.7
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 1.2e-103 381.3 408 58.1
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 2.1e-103 380.6 414 57.0
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 3.6e-103 379.8 583 44.4
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 4.7e-103 379.4 411 55.5
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 4.7e-103 379.4 411 55.5
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 3.1e-102 376.7 556 47.1
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 1.5e-101 374.4 433 53.6
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 2.0e-101 374.0 409 54.5
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 2.0e-101 374.0 402 55.5
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 2.6e-101 373.6 362 59.1
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 5.8e-101 372.5 415 53.7
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 9.8e-101 371.7 394 55.3
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 1.3e-100 371.3 392 56.4
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.3e-100 371.3 410 54.9
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 1.4e-99 367.9 437 52.6
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 1.9e-99 367.5 385 55.3
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 9.2e-99 365.2 382 56.0
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 1.6e-98 364.4 394 56.3
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 4.6e-98 362.8 422 54.5
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 6.6e-97 359.0 415 53.5
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.9e-96 357.5 407 52.8
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 1.6e-95 354.4 382 55.2
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 6.2e-95 352.4 323 59.8
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 8.1e-95 352.1 403 53.3
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 5.2e-94 349.4 394 54.3
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.2e-93 348.2 372 54.8
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 2.0e-93 347.4 348 58.0
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 2.6e-93 347.1 395 52.9
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 2.9e-92 343.6 374 54.5
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 3.8e-92 343.2 407 52.1
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 8.4e-92 342.0 380 53.7
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 8.4e-92 342.0 392 52.6
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.1e-91 341.7 381 53.0
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.1e-91 341.7 395 52.7
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 3.2e-91 340.1 387 51.4
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.2e-90 338.2 390 51.3
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 2.1e-90 337.4 311 57.9
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 6.0e-90 335.9 391 51.2
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 3.4e-85 320.1 403 48.9
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 1.9e-83 314.3 234 68.4
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 2.5e-72 277.3 418 46.4
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.7e-55 220.3 141 73.8
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 1.9e-51 208.0 357 39.2
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.2e-50 205.3 132 73.5
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 3.6e-50 203.8 242 45.0
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 6.7e-49 199.5 411 37.0
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 9.7e-48 195.7 340 41.5
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.2e-45 188.7 264 48.5
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 2.5e-43 181.0 316 38.6
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.2e-39 167.9 108 75.0
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 8.2e-39 166.0 193 47.2
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 1.5e-32 145.2 347 34.9
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 2.4e-30 137.9 199 42.2
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 5.3e-30 136.7 197 42.6
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 8.5e-28 129.4 199 41.7
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.1e-27 129.0 210 40.5
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 9.4e-27 125.9 103 56.3
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 9.4e-27 125.9 103 56.3
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 1.6e-26 125.2 117 55.6
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 1.4e-25 122.1 362 32.0
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 3.5e-21 107.5 115 53.9
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 7.2e-19 99.8 178 44.9
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 3.7e-15 87.4 149 45.0
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.4e-14 84.7 65 63.1
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 8.0e-10 69.7 301 27.6
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 1.0e-09 69.3 231 26.4
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 6.3e-07 60.1 120 35.0
AL3G51840 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 7.0e-06 56.6 232 25.4
Cfa017067 Carpinus fangiana HOM05D000428 ORTHO05D005608 9.2e-06 56.2 228 25.0
CDE11G0914 Ceratophyllum demersum HOM05D000086 ORTHO05D000431 9.2e-06 56.2 114 32.5


User provided reference genes

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