Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 3.7e-255 884.4 451 100.0
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 1.8e-177 626.3 455 70.3
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 2.0e-176 622.9 455 69.9
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 2.1e-173 612.8 441 66.4
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 3.5e-173 612.1 431 70.3
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.9e-171 606.3 463 67.0
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 8.1e-170 600.9 449 68.8
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.1e-169 599.0 463 66.3
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 8.9e-169 597.4 467 65.7
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.0e-168 596.3 456 66.7
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 9.9e-168 594.0 423 68.6
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 2.4e-166 589.3 487 63.0
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 4.1e-166 588.6 449 65.3
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 4.1e-166 588.6 475 64.4
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 4.1e-166 588.6 481 64.2
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 9.2e-166 587.4 456 66.2
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 9.2e-166 587.4 424 67.2
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.3e-164 582.8 412 68.9
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 6.6e-164 581.3 464 63.4
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 8.7e-164 580.9 398 71.6
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.5e-163 580.1 454 65.4
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 2.5e-163 579.3 409 68.2
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 4.3e-163 578.6 452 63.7
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 7.3e-163 577.8 456 65.1
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 6.2e-162 574.7 396 69.7
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 1.8e-161 573.2 469 63.5
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 2.4e-161 572.8 437 65.9
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 3.1e-161 572.4 424 66.3
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 6.9e-161 571.2 465 62.8
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 7.6e-160 567.8 403 66.0
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 7.6e-160 567.8 404 66.8
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 7.6e-160 567.8 404 66.8
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 7.6e-160 567.8 456 63.6
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 9.9e-160 567.4 402 66.2
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 3.8e-159 565.5 403 66.3
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 6.4e-159 564.7 399 68.4
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 8.4e-159 564.3 410 65.9
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 8.4e-159 564.3 398 66.6
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 8.4e-159 564.3 409 66.7
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 1.4e-158 563.5 401 65.6
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 1.9e-158 563.1 403 65.8
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.2e-158 562.0 397 67.3
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 5.4e-158 561.6 402 66.2
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 1.2e-157 560.5 401 65.6
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 1.2e-157 560.5 403 65.8
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.6e-157 560.1 401 68.1
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 2.1e-157 559.7 398 66.1
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 2.1e-157 559.7 398 66.1
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.1e-157 559.7 454 62.6
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 3.5e-157 558.9 365 72.1
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 6.0e-157 558.1 465 61.7
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 1.0e-156 557.4 365 71.8
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.0e-156 555.8 425 65.4
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.1e-156 555.1 398 67.8
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 6.6e-156 554.7 404 66.6
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 2.5e-155 552.7 445 60.9
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 4.3e-155 552.0 457 59.7
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 4.3e-155 552.0 428 65.7
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 7.3e-155 551.2 399 65.2
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 7.3e-155 551.2 401 65.6
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 7.3e-155 551.2 451 62.3
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 9.6e-155 550.8 401 65.6
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 2.1e-154 549.7 441 64.2
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 4.8e-154 548.5 465 60.9
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 6.2e-154 548.1 366 71.3
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 8.1e-154 547.7 452 61.7
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 1.1e-153 547.4 366 70.5
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.8e-153 546.6 405 65.2
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 2.4e-153 546.2 443 62.3
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 4.0e-153 545.4 439 62.9
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 4.0e-153 545.4 366 70.2
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 9.0e-153 544.3 401 64.8
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 9.0e-153 544.3 401 64.8
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 1.2e-152 543.9 451 60.1
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 2.0e-152 543.1 449 62.8
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 2.0e-152 543.1 452 61.3
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 7.6e-152 541.2 366 69.4
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 9.9e-152 540.8 484 60.3
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.3e-151 540.4 428 62.9
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 1.3e-151 540.4 362 69.3
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 1.1e-150 537.3 457 60.4
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 1.1e-150 537.3 391 66.5
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 4.2e-150 535.4 423 63.4
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 4.2e-150 535.4 366 68.6
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 9.3e-150 534.3 366 68.0
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 2.1e-149 533.1 436 61.5
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 2.1e-149 533.1 376 67.0
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 3.5e-149 532.3 376 67.6
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 4.6e-149 531.9 471 58.6
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 7.9e-149 531.2 387 65.4
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 7.9e-149 531.2 511 56.4
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.3e-148 530.4 333 73.6
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 3.9e-148 528.9 445 60.0
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 3.9e-148 528.9 421 62.9
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 1.1e-145 520.8 355 68.7
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 2.4e-145 519.6 420 61.4
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 5.3e-145 518.5 430 60.5
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 9.9e-144 514.2 358 67.0
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 3.8e-143 512.3 552 51.1
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 2.4e-142 509.6 401 61.6
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 3.5e-141 505.8 426 59.6
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.1e-139 500.7 354 67.2
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 1.6e-138 496.9 425 60.0
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 3.7e-138 495.7 329 71.1
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 4.8e-138 495.4 423 60.0
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 6.2e-138 495.0 373 67.0
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 8.2e-138 494.6 333 69.4
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.2e-136 490.7 394 61.4
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.2e-136 490.7 394 61.4
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 1.2e-136 490.7 475 58.1
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 1.3e-135 487.3 581 47.7
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 2.5e-134 483.0 435 57.5
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 1.2e-133 480.7 402 60.7
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 4.8e-130 468.8 453 53.4
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.4e-129 466.5 358 64.0
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.9e-129 464.9 414 59.4
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.6e-128 463.0 352 64.5
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 4.5e-128 462.2 399 59.1
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 4.2e-126 455.7 386 53.6
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 9.4e-126 454.5 423 57.2
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 3.0e-124 449.5 297 69.0
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 1.7e-122 443.7 303 69.6
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 1.0e-119 434.5 389 55.0
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 2.2e-119 433.3 353 58.1
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 5.1e-116 422.2 354 59.9
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.2e-114 416.8 419 51.8
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.8e-111 406.0 332 63.9
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 7.4e-107 391.7 389 51.2
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 1.4e-105 387.5 248 73.8
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.2e-103 380.2 252 70.2
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 3.8e-103 379.4 461 44.7
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 9.4e-102 374.8 221 76.9
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 7.5e-99 365.2 255 71.4
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 2.2e-95 353.6 206 77.7
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 2.6e-75 287.0 373 40.5
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 1.5e-67 261.2 329 43.5
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.2e-64 251.5 285 50.2
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 8.9e-60 235.3 282 43.3
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.1e-46 191.8 177 55.4
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 5.4e-41 172.9 147 58.5
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 4.3e-38 163.3 98 73.5
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.5e-35 154.8 106 68.9
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 1.8e-23 114.8 77 68.8
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 4.0e-20 103.6 108 50.0
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 4.5e-19 100.1 101 50.5
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 3.2e-17 94.0 93 48.4
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 7.1e-17 92.8 62 67.7
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.1e-16 91.3 57 68.4
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.1e-16 91.3 57 68.4
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.1e-16 91.3 57 68.4
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 6.1e-16 89.7 57 66.7
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 3.9e-15 87.0 54 68.5
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 6.7e-15 86.3 54 72.2
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 2.6e-11 74.3 83 53.0
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.0e-07 62.4 35 74.3
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.0e-07 62.4 35 74.3
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 2.3e-07 61.2 32 78.1
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 3.9e-07 60.5 53 56.6
Gorai.011G197900 Gossypium raimondii HOM05D004519 ORTHO05D017048 2.0e-06 58.2 35 71.4


User provided reference genes

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