Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 4.5e-36 154.1 78 100.0
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 2.2e-22 108.6 76 71.1
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.4e-21 105.9 76 68.4
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 4.1e-21 104.4 76 67.1
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 5.4e-21 104.0 73 65.8
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 7.0e-21 103.6 73 65.8
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 7.0e-21 103.6 73 68.5
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.6e-20 102.4 73 64.4
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.6e-20 102.4 73 64.4
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 2.0e-20 102.1 76 67.1
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 2.0e-20 102.1 73 64.4
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 2.0e-20 102.1 73 68.5
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.0e-20 102.1 73 64.4
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 2.7e-20 101.7 73 64.4
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 2.7e-20 101.7 73 67.1
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 3.5e-20 101.3 73 63.0
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 3.5e-20 101.3 73 61.6
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 3.5e-20 101.3 76 60.5
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 4.5e-20 100.9 76 65.8
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 5.9e-20 100.5 76 65.8
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 5.9e-20 100.5 76 64.5
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 5.9e-20 100.5 73 63.0
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 5.9e-20 100.5 73 64.4
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 5.9e-20 100.5 76 59.2
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 7.7e-20 100.1 73 64.4
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 7.7e-20 100.1 73 65.8
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 7.7e-20 100.1 73 61.6
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.0e-19 99.8 73 63.0
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.0e-19 99.8 73 64.4
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 1.3e-19 99.4 73 63.0
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.3e-19 99.4 73 61.6
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 1.3e-19 99.4 73 63.0
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.3e-19 99.4 73 63.0
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 1.7e-19 99.0 73 60.3
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.7e-19 99.0 73 61.6
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.7e-19 99.0 73 63.0
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 1.7e-19 99.0 73 63.0
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 2.3e-19 98.6 73 61.6
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 2.3e-19 98.6 73 64.4
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.3e-19 98.6 73 63.0
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 2.9e-19 98.2 73 61.6
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 2.9e-19 98.2 73 63.0
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 3.8e-19 97.8 73 61.6
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 5.0e-19 97.4 73 61.6
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 5.0e-19 97.4 73 63.0
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 5.0e-19 97.4 78 61.5
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 5.0e-19 97.4 73 61.6
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 5.0e-19 97.4 74 62.2
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 5.0e-19 97.4 73 63.0
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 5.0e-19 97.4 66 68.2
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 5.0e-19 97.4 73 57.5
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 8.6e-19 96.7 76 55.3
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 8.6e-19 96.7 69 63.8
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 8.6e-19 96.7 69 63.8
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 1.1e-18 96.3 73 60.3
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.1e-18 96.3 73 58.9
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 1.1e-18 96.3 73 58.9
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 1.5e-18 95.9 73 60.3
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 1.5e-18 95.9 73 60.3
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 1.5e-18 95.9 73 60.3
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 1.5e-18 95.9 70 62.9
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.9e-18 95.5 73 58.9
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 1.9e-18 95.5 73 58.9
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.9e-18 95.5 74 63.5
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 2.5e-18 95.1 73 57.5
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 2.5e-18 95.1 73 58.9
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 2.5e-18 95.1 73 56.2
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 2.5e-18 95.1 73 58.9
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 2.5e-18 95.1 73 58.9
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 2.5e-18 95.1 73 58.9
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.3e-18 94.7 73 56.2
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.3e-18 94.7 73 61.6
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 3.3e-18 94.7 73 58.9
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 4.2e-18 94.4 73 56.2
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 4.2e-18 94.4 73 58.9
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 5.5e-18 94.0 72 56.9
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 5.5e-18 94.0 73 54.8
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 5.5e-18 94.0 73 57.5
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 9.5e-18 93.2 60 75.0
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 9.5e-18 93.2 73 57.5
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 9.5e-18 93.2 73 57.5
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 9.5e-18 93.2 68 63.2
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 9.5e-18 93.2 68 63.2
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 9.5e-18 93.2 63 71.4
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.2e-17 92.8 73 57.5
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 1.2e-17 92.8 77 57.1
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.2e-17 92.8 77 55.8
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.2e-17 92.8 66 62.1
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 1.6e-17 92.4 77 57.1
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 1.6e-17 92.4 77 57.1
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 1.6e-17 92.4 77 57.1
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.6e-17 92.4 80 58.8
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.6e-17 92.4 61 70.5
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 2.1e-17 92.0 77 57.1
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.1e-17 92.0 73 61.6
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 2.1e-17 92.0 73 54.8
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 2.8e-17 91.7 73 60.3
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 2.8e-17 91.7 61 70.5
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 3.6e-17 91.3 73 56.2
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 3.6e-17 91.3 73 57.5
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 3.6e-17 91.3 73 60.3
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 4.7e-17 90.9 77 55.8
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 6.1e-17 90.5 59 64.4
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 8.0e-17 90.1 66 59.1
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 8.0e-17 90.1 66 59.1
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 8.0e-17 90.1 60 65.0
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 1.0e-16 89.7 70 58.6
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.8e-16 89.0 57 68.4
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.3e-16 88.6 59 67.8
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.3e-16 88.6 63 60.3
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 2.3e-16 88.6 59 62.7
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.3e-16 88.6 73 54.8
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 2.3e-16 88.6 67 55.2
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 3.0e-16 88.2 63 63.5
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 4.0e-16 87.8 78 51.3
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.0e-16 87.8 59 66.1
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 4.0e-16 87.8 70 60.0
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 5.2e-16 87.4 70 57.1
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 5.2e-16 87.4 57 66.7
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 5.2e-16 87.4 73 54.8
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 6.8e-16 87.0 70 57.1
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 1.2e-15 86.3 63 61.9
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 1.2e-15 86.3 50 74.0
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.5e-15 85.9 69 55.1
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 2.0e-15 85.5 73 56.2
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.6e-15 85.1 67 52.2
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 2.6e-15 85.1 59 61.0
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 3.4e-15 84.7 78 50.0
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 7.5e-15 83.6 47 72.3
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 1.7e-14 82.4 50 68.0
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.7e-14 82.4 73 52.1
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 4.9e-14 80.9 73 52.1
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 6.3e-14 80.5 78 52.6
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 6.3e-14 80.5 78 52.6
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 6.3e-14 80.5 78 52.6
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 6.3e-14 80.5 78 52.6
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.1e-13 79.7 70 51.4
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 1.4e-13 79.3 62 56.5
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 3.2e-13 78.2 50 62.0
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 4.7e-09 64.3 81 39.5
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 8.0e-09 63.5 61 49.2
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 2.3e-08 62.0 67 44.8
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 1.2e-07 59.7 48 58.3
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.5e-07 59.3 64 45.3
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.4e-07 58.2 71 40.8
Thhalv10019387m.g Eutrema salsugineum HOM05D007599 ORTHO05D009548 6.4e-06 53.9 73 35.6


User provided reference genes

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