Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 1.1e-245 852.8 413 100.0
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 5.6e-186 654.4 417 76.0
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 4.6e-180 634.8 420 72.6
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 3.4e-175 618.6 423 69.5
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 4.5e-175 618.2 423 69.3
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.7e-174 616.3 425 69.4
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.4e-173 613.2 427 69.1
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 1.4e-173 613.2 418 70.6
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.9e-173 612.8 423 68.8
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 2.5e-173 612.5 414 70.5
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 4.2e-173 611.7 425 68.2
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 9.3e-173 610.5 420 70.2
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 9.3e-173 610.5 423 68.8
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.2e-172 610.1 418 70.1
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 2.7e-172 609.0 424 69.6
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 2.3e-171 605.9 418 68.4
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 3.0e-171 605.5 419 68.7
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 5.1e-171 604.7 424 67.2
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 5.7e-170 601.3 420 69.0
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 9.7e-170 600.5 428 70.3
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.6e-169 599.7 424 68.4
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 1.6e-169 599.7 414 69.3
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 3.7e-169 598.6 431 67.5
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 6.3e-169 597.8 417 68.3
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 6.3e-169 597.8 418 68.2
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 8.2e-169 597.4 419 68.3
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.4e-168 596.7 415 69.6
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 2.4e-168 595.9 424 67.0
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 6.9e-168 594.3 417 67.1
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 6.9e-168 594.3 430 65.6
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 2.0e-167 592.8 419 69.0
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 2.6e-167 592.4 415 68.9
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 4.5e-167 591.7 417 68.6
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 1.3e-166 590.1 435 66.2
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 2.9e-166 589.0 435 65.1
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 2.9e-166 589.0 423 67.4
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 3.8e-166 588.6 427 67.4
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 1.4e-165 586.6 415 67.0
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 2.5e-165 585.9 419 66.6
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 2.5e-165 585.9 419 66.8
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 2.5e-165 585.9 426 64.8
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 9.4e-165 583.9 417 66.7
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 1.6e-164 583.2 419 66.6
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 1.6e-164 583.2 419 66.6
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.6e-164 583.2 435 65.1
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 2.1e-164 582.8 422 66.1
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 2.1e-164 582.8 426 65.3
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 2.7e-164 582.4 420 66.0
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 3.6e-164 582.0 416 66.6
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 4.6e-164 581.6 416 67.3
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 1.4e-163 580.1 419 66.3
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 1.8e-163 579.7 419 66.3
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 2.3e-163 579.3 429 64.8
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 3.0e-163 578.9 414 67.1
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 2.0e-162 576.2 421 65.6
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 2.5e-162 575.9 403 67.5
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 5.7e-162 574.7 418 65.6
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 7.4e-162 574.3 415 65.5
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 7.4e-162 574.3 422 66.6
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 7.4e-162 574.3 382 71.7
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 2.8e-161 572.4 434 64.1
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 8.2e-161 570.9 424 64.9
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.8e-160 569.7 430 64.9
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 9.1e-160 567.4 457 62.6
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 1.5e-159 566.6 434 63.8
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 2.6e-159 565.8 417 66.7
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 3.4e-159 565.5 424 63.9
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 4.5e-159 565.1 417 65.7
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 9.4e-157 557.4 410 65.6
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.2e-156 557.0 329 79.6
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 3.6e-156 555.4 421 64.8
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 6.1e-156 554.7 429 63.9
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 1.0e-155 553.9 429 63.6
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 1.0e-155 553.9 425 63.5
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.0e-154 549.7 378 69.6
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 9.7e-154 547.4 443 61.2
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.7e-153 545.4 411 64.5
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 6.3e-153 544.7 453 60.3
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 8.2e-153 544.3 362 70.7
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.8e-152 543.1 488 58.2
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 3.1e-152 542.3 411 64.5
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 4.1e-152 542.0 421 64.8
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 5.3e-152 541.6 416 63.2
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 5.0e-150 535.0 396 64.6
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.9e-149 533.1 393 65.4
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 1.9e-149 533.1 470 57.7
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 5.5e-149 531.6 434 59.7
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.6e-148 528.9 414 62.1
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.3e-146 522.3 451 58.5
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 9.1e-144 514.2 390 65.9
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 3.2e-141 505.8 449 58.4
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.0e-139 498.8 307 74.6
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 8.3e-137 491.1 409 61.1
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.4e-136 490.3 332 69.0
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 2.4e-136 489.6 337 69.7
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 2.9e-134 482.6 402 59.0
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 5.0e-134 481.9 421 56.5
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 8.5e-134 481.1 319 70.5
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.2e-130 470.7 302 72.8
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.3e-129 467.2 311 66.6
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 1.8e-128 463.4 421 53.4
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.6e-124 450.3 423 51.8
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 4.7e-124 448.7 407 56.3
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.0e-123 447.6 310 68.4
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.2e-122 444.1 404 53.7
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.5e-122 443.7 327 63.9
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 3.5e-119 432.6 413 51.6
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.5e-114 417.2 434 50.2
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.8e-107 391.7 305 63.0
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.7e-102 377.1 317 58.7
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.1e-99 366.3 287 62.0
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 5.4e-96 355.5 278 63.7
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.9e-80 303.9 183 71.6
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 6.6e-78 295.4 278 55.4
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 3.2e-72 276.6 463 36.7
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 8.1e-68 261.9 217 54.4
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 2.2e-65 253.8 374 40.9
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 2.5e-61 240.4 418 38.0
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 2.5e-56 223.8 567 29.5
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 3.2e-48 196.8 240 47.9
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 5.3e-43 179.5 204 46.1
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 2.5e-40 170.6 166 55.4
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 7.2e-40 169.1 129 64.3
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 7.4e-37 159.1 119 65.5
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 1.2e-34 151.8 117 60.7
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 4.4e-29 133.3 139 53.2
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 6.3e-28 129.4 122 59.8
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 7.7e-26 122.5 255 34.5
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 2.0e-21 107.8 122 45.9
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.8e-15 87.4 60 73.3
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 2.0e-13 81.3 103 47.6
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.3e-09 67.8 62 56.5
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 3.6e-07 60.5 64 45.3


User provided reference genes

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