Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 4.0e-262 907.5 449 100.0
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 1.3e-260 902.5 449 99.3
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 4.3e-179 631.7 454 67.4
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 4.9e-167 591.7 458 65.3
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 6.2e-162 574.7 458 64.2
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 4.4e-160 568.5 457 63.9
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 3.0e-156 555.8 452 62.2
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 1.8e-153 546.6 449 61.0
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 1.7e-151 540.0 453 60.9
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.2e-149 533.9 450 61.3
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 6.6e-148 528.1 450 58.7
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 1.2e-146 523.9 448 60.9
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.8e-145 520.0 416 62.3
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 6.9e-145 518.1 422 61.8
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 6.9e-145 518.1 411 62.8
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 1.5e-144 516.9 437 60.0
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 1.3e-143 513.8 436 59.9
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 2.9e-143 512.7 454 59.0
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 2.4e-142 509.6 416 59.6
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 5.4e-142 508.4 408 62.0
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 9.3e-142 507.7 398 62.3
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 4.6e-141 505.4 444 58.3
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.6e-141 505.4 404 62.6
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 6.0e-141 505.0 408 60.0
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 1.0e-140 504.2 410 60.0
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 1.0e-140 504.2 434 58.5
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 1.7e-140 503.4 398 61.3
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 8.7e-140 501.1 407 60.0
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 2.5e-139 499.6 349 67.9
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 4.3e-139 498.8 451 58.3
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 7.3e-139 498.0 447 57.5
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 1.3e-138 497.3 411 59.6
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 2.8e-138 496.1 414 58.5
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 8.1e-138 494.6 422 59.2
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 8.1e-138 494.6 422 59.2
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 8.1e-138 494.6 399 63.2
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 8.1e-138 494.6 427 58.8
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 1.1e-137 494.2 441 57.1
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 1.8e-137 493.4 450 55.3
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.8e-137 493.4 453 57.6
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 4.0e-137 492.3 533 51.4
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 5.3e-137 491.9 418 59.3
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 9.0e-137 491.1 395 62.3
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 9.0e-137 491.1 396 60.9
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 2.0e-136 490.0 449 58.1
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 2.6e-136 489.6 434 58.1
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 3.4e-136 489.2 423 55.8
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 3.4e-136 489.2 354 65.8
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 4.5e-136 488.8 453 55.8
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 7.6e-136 488.0 445 55.7
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 7.6e-136 488.0 447 57.0
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 9.9e-136 487.6 421 58.2
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 3.8e-135 485.7 437 57.2
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 2.1e-133 479.9 449 55.9
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 3.5e-133 479.2 406 58.9
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 2.3e-132 476.5 420 57.6
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 3.0e-132 476.1 417 57.6
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 6.7e-132 474.9 408 57.4
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 6.7e-132 474.9 429 57.1
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 4.3e-131 472.2 457 54.3
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 4.3e-131 472.2 411 58.6
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 1.3e-130 470.7 449 54.8
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 6.2e-130 468.4 409 57.7
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 1.2e-128 464.2 406 58.1
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 1.5e-128 463.8 441 55.1
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 2.6e-128 463.0 409 57.7
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 4.9e-127 458.8 370 60.3
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 4.2e-126 455.7 404 56.9
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 4.2e-126 455.7 385 60.3
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 1.6e-125 453.8 446 54.0
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 2.1e-125 453.4 410 55.6
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 7.9e-125 451.4 397 58.2
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 1.0e-124 451.1 414 56.8
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 1.3e-124 450.7 407 58.5
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 6.7e-124 448.4 397 58.7
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 1.5e-123 447.2 397 57.9
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 3.3e-123 446.0 404 57.9
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 7.4e-123 444.9 398 57.3
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 3.7e-122 442.6 397 57.7
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 6.2e-122 441.8 398 57.3
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 3.1e-121 439.5 379 60.7
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 7.9e-117 424.9 391 52.9
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 5.7e-115 418.7 400 54.5
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 3.7e-114 416.0 416 53.6
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 3.1e-113 412.9 412 53.4
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 1.1e-110 404.4 398 52.8
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 3.4e-104 382.9 341 56.9
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 7.9e-101 371.7 409 48.9
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 1.4e-97 360.9 344 55.2
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 7.7e-96 355.1 279 60.2
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.5e-94 350.1 404 47.0
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 5.0e-87 325.9 300 57.0
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 4.2e-86 322.8 271 60.5
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.7e-85 320.1 332 50.9
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 9.1e-81 305.1 297 54.5
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 8.0e-77 292.0 329 49.2
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 5.2e-68 262.7 405 42.2
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 1.7e-66 257.7 228 57.9
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 4.5e-64 249.6 307 45.6
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 1.0e-63 248.4 183 63.9
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.3e-63 248.1 296 47.3
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 9.5e-62 241.9 432 36.1
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 1.4e-57 228.0 181 59.7
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 2.4e-57 227.3 243 52.3
QL03p056162 Quercus lobata HOM05D006855 ORTHO05D008695 2.5e-54 217.2 151 66.9
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.4e-51 206.8 147 66.0
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 7.5e-51 205.7 156 63.5
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.1e-49 199.9 150 63.3
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.9e-47 193.4 242 45.9
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 9.5e-46 188.7 217 46.5
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 5.2e-44 183.0 278 41.4
FAN15G2953 Fragaria x ananassa HOM05D006855 ORTHO05D008695 9.3e-33 145.6 122 56.6
FAN23G2199 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.0e-31 142.1 119 56.3
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.0e-27 127.9 122 49.2
CSS0040008 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 6.4e-26 122.9 137 43.1
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 2.4e-25 120.9 142 45.8
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 4.9e-18 96.7 108 47.2
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 1.1e-17 95.5 344 25.6
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 2.4e-17 94.4 345 29.0
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 7.1e-17 92.8 364 24.5
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 1.2e-16 92.0 338 26.9
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 1.0e-15 89.0 349 26.6
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 1.8e-15 88.2 337 26.1
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 3.0e-15 87.4 332 26.5
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 3.0e-15 87.4 337 28.2
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 3.0e-15 87.4 331 25.7
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 3.9e-15 87.0 348 25.0
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 3.9e-15 87.0 331 25.7
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 6.7e-15 86.3 336 25.0
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 6.7e-15 86.3 349 24.9
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 8.7e-15 85.9 347 26.8
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 8.7e-15 85.9 337 25.5
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 8.7e-15 85.9 338 24.9
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 8.7e-15 85.9 359 24.2
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 8.7e-15 85.9 344 25.6
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 1.1e-14 85.5 329 25.5
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 2.5e-14 84.3 337 27.0
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 2.5e-14 84.3 345 26.1
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 3.3e-14 84.0 354 23.7
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 3.3e-14 84.0 334 24.6
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 4.3e-14 83.6 341 25.5
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 4.3e-14 83.6 330 26.4
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 7.4e-14 82.8 346 24.3
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 9.6e-14 82.4 351 24.2
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 2.1e-13 81.3 361 26.3
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 3.7e-13 80.5 325 25.2
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.1e-12 79.0 353 25.8
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.8e-12 78.2 336 25.0
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 2.4e-12 77.8 341 26.1
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 3.1e-12 77.4 353 25.8
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 3.1e-12 77.4 344 25.6
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 3.1e-12 77.4 360 25.3
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 3.1e-12 77.4 66 54.5
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 6.9e-12 76.3 344 24.1
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 2.6e-11 74.3 338 25.1
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 2.6e-11 74.3 338 24.0
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 5.8e-11 73.2 353 23.5
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 3.8e-10 70.5 332 23.8
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 3.8e-10 70.5 335 23.6
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 1.1e-09 68.9 337 27.0
MBI09_g33807_MAGBIO Magnolia biondii HOM05D000279 ORTHO05D012276 4.3e-06 57.0 34 73.5


User provided reference genes

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