Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 0.0e+00 1308.5 687 100.0
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 4.9e-259 897.9 681 69.3
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.8e-249 864.0 691 68.2
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 2.3e-245 852.4 631 69.7
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 5.8e-244 847.8 631 69.1
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 1.9e-239 832.8 618 68.0
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 2.4e-234 815.8 632 67.2
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 3.3e-231 805.4 632 66.0
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 9.6e-231 803.9 622 66.7
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 2.8e-230 802.4 622 66.6
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 3.6e-230 802.0 673 62.3
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 1.8e-229 799.7 633 65.9
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.2e-228 797.0 627 65.9
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.2e-228 797.0 627 65.9
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 4.4e-228 795.0 622 66.1
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 4.4e-228 795.0 632 65.3
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 2.2e-227 792.7 621 66.2
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 2.2e-227 792.7 536 73.3
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 2.9e-227 792.3 632 65.2
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 8.4e-227 790.8 656 63.4
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 4.2e-226 788.5 546 71.4
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 9.3e-226 787.3 628 64.2
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 4.6e-225 785.0 625 63.8
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 3.0e-224 782.3 620 65.0
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 3.9e-224 781.9 635 65.7
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 3.9e-224 781.9 630 64.0
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 8.7e-224 780.8 627 63.6
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 2.5e-223 779.2 633 65.6
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 3.3e-223 778.9 577 66.6
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 5.6e-223 778.1 633 65.7
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.6e-222 776.5 633 65.4
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 3.6e-222 775.4 564 68.8
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 6.2e-222 774.6 633 64.3
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 4.0e-221 771.9 629 63.1
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 5.3e-221 771.5 657 62.4
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 6.9e-221 771.2 625 63.2
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 6.9e-221 771.2 634 62.5
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 9.0e-221 770.8 631 65.0
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 6.4e-219 764.6 633 63.2
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 6.4e-219 764.6 629 62.5
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 5.4e-218 761.5 622 64.5
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 9.3e-218 760.8 624 64.4
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 6.0e-217 758.1 627 62.4
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.3e-214 750.4 626 61.8
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.8e-213 746.5 559 67.1
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 1.5e-212 743.4 632 62.8
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 2.6e-212 742.7 620 61.5
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 6.5e-211 738.0 627 61.1
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 7.1e-210 734.6 659 59.2
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 7.1e-210 734.6 629 62.0
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.6e-209 733.4 627 61.1
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 1.0e-208 730.7 633 61.9
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 1.0e-208 730.7 623 62.0
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.0e-208 729.2 632 59.5
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 1.9e-207 726.5 634 60.9
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.6e-206 723.4 621 61.7
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 2.8e-206 722.6 627 60.1
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 4.8e-206 721.8 632 61.2
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 6.2e-206 721.5 632 61.4
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 8.2e-206 721.1 617 62.1
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.8e-205 719.9 628 60.5
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 5.3e-205 718.4 626 59.7
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 4.5e-204 715.3 621 61.8
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 7.6e-204 714.5 587 63.4
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 7.6e-204 714.5 628 60.8
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 1.3e-203 713.8 630 58.7
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 1.7e-203 713.4 661 57.3
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 2.9e-203 712.6 619 59.5
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 1.6e-201 706.8 575 63.1
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 6.7e-200 701.4 627 58.5
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 6.3e-198 694.9 620 60.8
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 2.4e-197 693.0 546 64.8
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 3.8e-195 685.6 615 60.8
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 5.0e-195 685.3 632 57.8
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 1.1e-194 684.1 524 64.7
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 9.4e-194 681.0 632 59.7
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 3.9e-192 675.6 626 57.5
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.7e-190 670.2 630 58.7
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 3.7e-190 669.1 617 57.5
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 2.2e-182 643.3 627 54.9
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 2.4e-181 639.8 627 54.5
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 2.9e-179 632.9 614 54.1
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 5.0e-179 632.1 634 54.6
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 2.1e-177 626.7 626 53.7
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 8.0e-177 624.8 626 53.5
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 5.2e-176 622.1 507 63.7
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 2.6e-175 619.8 652 53.1
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 5.3e-173 612.1 617 53.5
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-167 593.6 572 59.4
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 4.4e-167 592.4 622 52.4
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 3.8e-163 579.3 458 64.2
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 2.8e-158 563.1 622 50.3
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 7.7e-156 555.1 457 63.5
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 1.5e-151 540.8 457 61.7
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 2.6e-151 540.0 621 48.3
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 3.4e-151 539.7 636 47.5
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 1.3e-142 511.1 620 48.7
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.3e-142 508.4 449 64.1
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 5.0e-139 499.2 625 48.0
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.1e-137 493.8 332 74.1
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 8.9e-136 488.4 360 68.3
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.7e-126 456.4 364 64.0
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 2.4e-120 437.2 371 63.6
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 4.0e-120 436.4 316 68.0
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 7.1e-117 425.6 505 48.5
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-109 401.4 574 46.3
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 5.8e-95 352.8 335 57.6
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.3e-85 318.9 247 68.0
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 5.3e-80 303.1 261 63.6
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 3.2e-77 293.9 298 55.7
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.5e-74 285.0 351 46.7
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-74 284.6 194 72.7
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-73 281.6 206 71.4
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.7e-68 263.5 208 67.8
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 1.7e-65 255.0 207 64.3
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 9.4e-61 239.2 172 68.6
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 4.7e-60 236.9 174 70.1
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 4.4e-50 203.8 174 63.2
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 4.4e-50 203.8 174 63.2
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.2e-44 185.7 169 55.0
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.8e-43 181.8 123 71.5
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 8.3e-41 172.9 106 80.2
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 5.0e-38 163.7 153 57.5
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.3e-37 161.0 260 43.5
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.4e-34 150.6 93 78.5
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-33 148.7 105 70.5
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 2.0e-31 141.7 169 51.5
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.0e-30 139.4 97 70.1
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-26 125.9 80 76.2
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 8.3e-25 119.8 192 43.2
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 3.2e-24 117.9 132 50.8
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-21 109.4 78 71.8
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 8.9e-19 99.8 58 81.0
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 2.6e-18 98.2 311 28.6
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 1.3e-17 95.9 78 60.3
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 1.2e-15 89.4 66 62.1
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 1.5e-10 72.4 86 47.7
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 1.3e-09 69.3 89 46.1
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 4.9e-09 67.4 46 63.0
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 1.9e-08 65.5 46 60.9
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 1.9e-08 65.5 46 60.9
EL10Ac1g01005 Beta vulgaris HOM05D005920 ORTHO05D007211 3.0e-06 58.2 115 35.7
Ciclev10001211m.g Citrus clementina HOM05D005920 ORTHO05D007211 5.1e-06 57.4 105 34.3
CAN.G254.1 Capsicum annuum HOM05D003813 ORTHO05D004557 6.6e-06 57.0 38 60.5
Glyma.13G080100 Glycine max HOM05D005920 ORTHO05D007211 8.6e-06 56.6 115 32.2


User provided reference genes

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