Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 0.0e+00 1838.5 923 100.0
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 2.6e-255 885.9 917 51.5
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 1.5e-250 870.2 924 51.6
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 4.0e-232 808.9 942 47.0
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 8.9e-232 807.7 942 48.2
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 3.4e-231 805.8 1016 45.8
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.1e-226 790.8 933 48.6
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 4.3e-226 788.9 936 46.2
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 8.4e-222 774.6 1054 44.3
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 3.0e-219 766.1 1067 44.2
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 6.9e-216 755.0 928 47.5
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 4.4e-215 752.3 948 47.3
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 1.3e-214 750.7 938 45.5
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 1.0e-211 741.1 940 46.0
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 8.1e-209 731.5 1041 42.7
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.4e-208 730.7 954 45.3
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 1.2e-207 727.6 955 44.7
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 1.7e-206 723.8 1081 42.0
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 4.9e-206 722.2 1082 43.1
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 4.2e-205 719.2 918 45.8
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 4.2e-205 719.2 945 43.5
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 5.1e-203 712.2 956 44.6
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 9.6e-202 708.0 926 43.0
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 3.1e-200 703.0 971 42.1
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 4.0e-200 702.6 923 44.0
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.5e-199 700.7 1092 41.9
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 2.6e-199 699.9 1015 42.8
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 1.3e-198 697.6 952 42.6
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.7e-198 697.2 948 44.0
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 1.2e-196 691.0 915 44.8
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 3.5e-196 689.5 923 45.6
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 6.0e-196 688.7 943 43.1
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 1.3e-195 687.6 936 43.3
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 1.8e-195 687.2 1059 41.1
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 3.9e-195 686.0 804 48.8
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 3.9e-195 686.0 935 43.2
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 3.9e-195 686.0 923 43.1
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 1.1e-194 684.5 1052 39.5
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 4.3e-194 682.6 935 43.4
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 7.4e-194 681.8 931 42.7
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 2.0e-191 673.7 932 42.2
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 2.6e-191 673.3 940 42.4
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 1.3e-190 671.0 925 43.1
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 1.3e-190 671.0 1085 38.4
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 1.7e-190 670.6 924 43.2
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 3.8e-190 669.5 935 42.9
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 3.8e-190 669.5 998 40.4
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 8.4e-190 668.3 923 42.5
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 8.4e-190 668.3 923 42.5
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 8.4e-190 668.3 925 42.5
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 3.2e-189 666.4 921 42.6
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 5.5e-189 665.6 923 42.3
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 9.3e-189 664.8 927 42.8
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.6e-188 664.1 910 42.6
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 7.9e-188 661.8 947 42.2
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.1e-186 657.9 947 43.1
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 9.6e-186 654.8 1047 38.8
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.5e-183 647.5 1001 39.9
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 1.7e-182 644.0 1067 38.8
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 3.8e-182 642.9 1028 39.6
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 6.5e-182 642.1 988 40.1
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.1e-180 637.1 940 40.5
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 6.1e-180 635.6 916 41.4
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 1.1e-178 631.3 974 41.8
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.1e-178 631.3 942 39.7
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 2.8e-177 626.7 949 40.4
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 1.4e-176 624.4 984 40.7
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.5e-175 620.9 978 39.0
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 1.5e-175 620.9 978 39.0
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 2.6e-175 620.2 1032 38.6
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 4.5e-175 619.4 1039 37.4
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 7.7e-175 618.6 937 41.3
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.3e-174 617.8 1060 40.2
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 1.3e-174 617.8 1097 39.1
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 5.0e-174 615.9 1020 39.3
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 2.1e-172 610.5 814 45.3
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 3.6e-172 609.8 1070 36.3
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 6.1e-172 609.0 925 40.2
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.4e-171 607.8 1077 39.1
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.1e-170 604.7 743 45.9
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 1.1e-170 604.7 698 49.0
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 9.7e-170 601.7 926 41.7
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.4e-168 597.8 1004 38.2
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 4.5e-167 592.8 1153 34.6
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 8.5e-166 588.6 908 40.0
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 8.5e-166 588.6 937 40.3
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 3.2e-165 586.6 1080 38.1
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 1.6e-164 584.3 965 38.3
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 3.0e-163 580.1 533 55.2
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 5.7e-162 575.9 999 37.5
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 8.2e-161 572.0 810 41.4
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 5.3e-160 569.3 905 39.0
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 2.0e-159 567.4 924 38.2
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 2.9e-158 563.5 975 36.7
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 1.0e-155 555.1 1185 32.6
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 1.5e-154 551.2 990 36.2
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 6.5e-150 535.8 975 36.6
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 7.0e-144 515.8 714 43.0
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 1.7e-142 511.1 946 36.2
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 6.5e-142 509.2 806 39.0
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 4.4e-138 496.5 919 33.8
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 5.7e-138 496.1 949 38.0
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 4.3e-133 479.9 617 45.4
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 4.4e-122 443.4 507 44.8
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 5.8e-122 443.0 916 33.2
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 4.9e-121 439.9 641 43.7
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 5.0e-118 429.9 679 41.1
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 7.3e-117 426.0 504 46.6
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 5.1e-110 403.3 328 54.6
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.1e-104 385.6 375 50.9
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 5.2e-99 366.7 321 56.7
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 2.0e-98 364.8 891 29.7
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 3.5e-95 354.0 906 30.4
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 4.8e-92 343.6 493 38.1
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 4.5e-82 310.5 292 56.2
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 3.4e-74 284.3 572 35.1
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.0e-57 229.6 280 46.1
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 5.5e-56 223.8 297 43.1
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.7e-55 220.7 599 29.7
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 2.8e-52 211.5 273 41.0
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 5.3e-51 207.2 208 54.3
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.5e-50 205.7 217 46.5
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 5.9e-50 203.8 239 43.5
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 2.5e-48 198.4 221 44.3
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 1.0e-46 193.0 136 66.2
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.5e-45 189.1 206 51.0
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.0e-41 176.4 456 30.7
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 6.5e-41 173.7 287 39.4
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 2.1e-39 168.7 208 40.9
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 2.7e-39 168.3 439 28.7
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 4.7e-39 167.5 208 47.1
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.1e-35 154.8 239 41.0
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 9.4e-32 143.3 209 39.7
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 8.8e-30 136.7 89 71.9
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.7e-28 131.3 85 68.2
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 6.3e-28 130.6 199 39.2
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.1e-27 127.9 532 29.1
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 9.1e-27 126.7 375 28.5
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 2.9e-25 121.7 205 39.5
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 3.3e-24 118.2 190 36.8
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 4.7e-23 114.4 179 39.1
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.2e-18 99.8 114 50.0
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.7e-18 98.6 180 33.9
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 2.9e-12 78.6 137 32.8
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 4.6e-10 71.2 51 60.8
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 3.9e-09 68.2 99 39.4
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 9.5e-08 63.5 139 28.8
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 1.2e-07 63.2 38 76.3
MD03G1008700 Malus domestica HOM05D004666 ORTHO05D005822 8.0e-07 60.5 32 75.0
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 8.0e-07 60.5 102 31.4


User provided reference genes

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