Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00917 Aquilegia oxysepala HOM05D002401 ORTHO05D007109 2.6e-71 271.9 135 100.0
Medtr1g106190 Medicago truncatula HOM05D002401 ORTHO05D007109 9.6e-18 94.0 65 67.7
TPR.G21143 Trifolium pratense HOM05D002401 ORTHO05D007109 1.6e-17 93.2 65 66.2
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 2.1e-17 92.8 58 72.4
Manes.14G015200 Manihot esculenta HOM05D002401 ORTHO05D007109 3.6e-17 92.0 58 72.4
FvH4_3g43830 Fragaria vesca HOM05D002401 ORTHO05D007109 6.2e-17 91.3 55 69.1
FAN11G0540 Fragaria x ananassa HOM05D002401 ORTHO05D007109 6.2e-17 91.3 55 69.1
Potri.001G014000 Populus trichocarpa HOM05D002401 ORTHO05D007109 6.2e-17 91.3 67 67.2
Prupe.6G017700 Prunus persica HOM05D002401 ORTHO05D007109 6.2e-17 91.3 58 67.2
QL01p009075 Quercus lobata HOM05D002401 ORTHO05D007109 6.2e-17 91.3 55 70.9
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 8.1e-17 90.9 55 69.1
RcHm_v2.0_Chr5g0079311 Rosa chinensis HOM05D002401 ORTHO05D007109 1.1e-16 90.5 58 65.5
arahy.Tifrunner.gnm1.ann1.IPP45T Arachis hypogaea HOM05D002401 ORTHO05D007109 1.4e-16 90.1 58 67.2
CSS0016162 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 1.4e-16 90.1 58 65.5
CSS0023444 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 1.4e-16 90.1 58 65.5
CSS0035740 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 1.4e-16 90.1 58 65.5
CSS0040450 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 1.4e-16 90.1 58 65.5
CiPaw.13G168200 Carya illinoinensis HOM05D002401 ORTHO05D007109 1.8e-16 89.7 55 69.1
Lalb_Chr21g0308061 Lupinus albus HOM05D002401 ORTHO05D007109 1.8e-16 89.7 58 63.8
Sabra03G0155200 Salix brachista HOM05D002401 ORTHO05D007109 2.4e-16 89.4 55 72.7
Phvul.007G046000 Phaseolus vulgaris HOM05D002401 ORTHO05D007109 4.0e-16 88.6 58 65.5
VMungo0720G0059 Vigna mungo HOM05D002401 ORTHO05D007109 4.0e-16 88.6 58 63.8
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 5.3e-16 88.2 58 69.0
Ca_02939_v3 Cicer arietinum L. HOM05D002401 ORTHO05D007109 6.9e-16 87.8 65 63.1
Glyma.20G134600 Glycine max HOM05D002401 ORTHO05D007109 6.9e-16 87.8 58 63.8
Lj1P433T23 Lonicera japonica HOM05D002401 ORTHO05D007109 6.9e-16 87.8 58 67.2
Phvul.002G015200 Phaseolus vulgaris HOM05D002401 ORTHO05D007109 6.9e-16 87.8 58 65.5
COL.COLO4_10387 Corchorus olitorius HOM05D002401 ORTHO05D007109 9.0e-16 87.4 55 72.7
ECA233G1816 Erigeron canadensis HOM05D002401 ORTHO05D007109 9.0e-16 87.4 58 67.2
GSVIVG01025351001 Vitis vinifera HOM05D002401 ORTHO05D007109 9.0e-16 87.4 55 70.9
Atru.chr3.2466 Acer truncatum HOM05D002401 ORTHO05D007109 1.2e-15 87.0 58 69.0
Carub.0001s0388 Capsella rubella HOM05D002401 ORTHO05D007109 1.5e-15 86.7 55 65.5
MSTRG.225 Avicennia marina HOM05D002401 ORTHO05D007109 2.0e-15 86.3 58 63.8
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.0e-15 86.3 55 65.5
Gohir.A13G215000 Gossypium hirsutum HOM05D002401 ORTHO05D007109 2.0e-15 86.3 55 69.1
Gohir.D13G218700 Gossypium hirsutum HOM05D002401 ORTHO05D007109 2.0e-15 86.3 55 69.1
Gorai.013G249500 Gossypium raimondii HOM05D002401 ORTHO05D007109 2.0e-15 86.3 55 69.1
Aa31LG1G20230 Aethionema arabicum HOM05D002401 ORTHO05D007109 2.6e-15 85.9 59 66.1
Ciclev10016532m.g Citrus clementina HOM05D002401 ORTHO05D007109 2.6e-15 85.9 58 65.5
Duzib168G1104 Durio zibethinus HOM05D002401 ORTHO05D007109 2.6e-15 85.9 66 62.1
FAN25G3049 Fragaria x ananassa HOM05D002401 ORTHO05D007109 2.6e-15 85.9 55 65.5
Oeu007983.1 Olea europaea HOM05D002401 ORTHO05D007109 2.6e-15 85.9 58 62.1
Actinidia39375 Actinidia chinensis HOM05D002401 ORTHO05D007109 3.4e-15 85.5 58 65.5
Lj1P432T20 Lonicera japonica HOM05D002401 ORTHO05D007109 3.4e-15 85.5 55 67.3
Nitab4.5_0009644g0010 Nicotiana tabacum HOM05D002401 ORTHO05D007109 4.5e-15 85.1 55 63.6
Psat6g214760 Pisum sativum HOM05D002401 ORTHO05D007109 4.5e-15 85.1 65 61.5
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 4.5e-15 85.1 52 73.1
Sc16g0011880 Simmondsia chinensis HOM05D002401 ORTHO05D007109 4.5e-15 85.1 52 73.1
arahy.Tifrunner.gnm1.ann1.EBKF2Y Arachis hypogaea HOM05D002401 ORTHO05D007109 5.8e-15 84.7 58 62.1
Cc01_g03820 Coffea canephora HOM05D002401 ORTHO05D007109 5.8e-15 84.7 55 63.6
Glyma.10G256700 Glycine max HOM05D002401 ORTHO05D007109 5.8e-15 84.7 58 63.8
PSO675G9034 Papaver somniferum HOM05D002401 ORTHO05D007109 5.8e-15 84.7 55 70.9
CAN.G1058.20 Capsicum annuum HOM05D002401 ORTHO05D007109 7.6e-15 84.3 55 61.8
AT1G04640 Arabidopsis thaliana HOM05D002401 ORTHO05D007109 9.9e-15 84.0 55 67.3
CSS0046228 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D007109 9.9e-15 84.0 58 62.1
Thecc.09G219400 Theobroma cacao HOM05D002401 ORTHO05D007109 9.9e-15 84.0 66 60.6
Nn6g34874 Nelumbo nucifera HOM05D002401 ORTHO05D007109 1.3e-14 83.6 58 67.2
Nitab4.5_0000140g0030 Nicotiana tabacum HOM05D002401 ORTHO05D007109 1.3e-14 83.6 55 65.5
ClCG03G013630 Citrullus lanatus HOM05D002401 ORTHO05D007109 1.7e-14 83.2 60 61.7
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.7e-14 83.2 65 58.5
Lj5g0001405 Lotus japonicus HOM05D002401 ORTHO05D007109 1.7e-14 83.2 65 58.5
TAR636G2973 Trochodendron aralioides HOM05D002401 ORTHO05D007109 1.7e-14 83.2 66 62.1
AL1G14330 Arabidopsis lyrata HOM05D002401 ORTHO05D007109 2.2e-14 82.8 55 65.5
CARHR004000 Cardamine hirsuta HOM05D002401 ORTHO05D007109 2.2e-14 82.8 55 63.6
AUR62019226 Chenopodium quinoa HOM05D002401 ORTHO05D007109 2.2e-14 82.8 51 70.6
MBI19_g15086_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D007109 2.2e-14 82.8 55 65.5
MD11G1020800 Malus domestica HOM05D002401 ORTHO05D007109 2.9e-14 82.4 58 58.6
Migut.N02287 Erythranthe guttata HOM05D002401 ORTHO05D007109 3.8e-14 82.0 56 66.1
Eucgr.B02601 Eucalyptus grandis HOM05D002401 ORTHO05D007109 3.8e-14 82.0 55 61.8
Thhalv10009297m.g Eutrema salsugineum HOM05D002401 ORTHO05D007109 3.8e-14 82.0 55 63.6
PSO017G5010 Papaver somniferum HOM05D002401 ORTHO05D007109 3.8e-14 82.0 55 72.7
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 4.9e-14 81.6 55 65.5
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 4.9e-14 81.6 55 65.5
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 4.9e-14 81.6 55 65.5
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 4.9e-14 81.6 55 65.5
Sopen02g022370 Solanum pennellii HOM05D002401 ORTHO05D007109 4.9e-14 81.6 55 61.8
HanXRQChr02g0056731 Helianthus annuus HOM05D002401 ORTHO05D007109 6.4e-14 81.3 58 62.1
Sp1g03480 Schrenkiella parvula HOM05D002401 ORTHO05D007109 6.4e-14 81.3 55 63.6
Peaxi162Scf00062g00142 Petunia axillaris HOM05D002401 ORTHO05D007109 8.4e-14 80.9 55 61.8
PGSC0003DMG400010797 Solanum tuberosum HOM05D002401 ORTHO05D007109 8.4e-14 80.9 55 61.8
Ah.04g161710 Amaranthus hybridus HOM05D002401 ORTHO05D007109 1.1e-13 80.5 52 67.3
DCAR_002030 Daucus carota HOM05D000038 ORTHO05D000143 1.1e-13 80.5 55 65.5
SalBow2G2702 Salvia bowleyana HOM05D002401 ORTHO05D007109 1.1e-13 80.5 62 56.5
Sp4g14620 Schrenkiella parvula HOM05D002401 ORTHO05D007109 1.1e-13 80.5 55 61.8
BraA08t35583Z Brassica rapa HOM05D002401 ORTHO05D007109 1.4e-13 80.1 55 63.6
PGSC0003DMG400031756 Solanum tuberosum HOM05D002401 ORTHO05D007109 1.4e-13 80.1 55 61.8
Solyc02g077460.3 Solanum lycopersicum HOM05D002401 ORTHO05D007109 1.9e-13 79.7 55 60.0
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 1.9e-13 79.7 58 63.8
BcaC07g36894 Brassica carinata HOM05D002401 ORTHO05D007109 2.4e-13 79.3 56 64.3
C08p01320 Brassica napus HOM05D002401 ORTHO05D007109 2.4e-13 79.3 56 64.3
A08p36800 Brassica napus HOM05D002401 ORTHO05D007109 3.2e-13 79.0 55 63.6
CsaV3_1G042440 Cucumis sativus L. HOM05D002401 ORTHO05D007109 3.2e-13 79.0 46 69.6
BolC8t46934H Brassica oleracea HOM05D002401 ORTHO05D007109 5.5e-13 78.2 56 62.5
BolC8t46940H Brassica oleracea HOM05D002401 ORTHO05D007109 5.5e-13 78.2 56 62.5
PSO170G3695 Papaver somniferum HOM05D002401 ORTHO05D007109 7.1e-13 77.8 55 69.1
MELO3C015679.2 Cucumis melo HOM05D002401 ORTHO05D007109 9.3e-13 77.4 46 67.4
TWI32G0621 Tripterygium wilfordii HOM05D002401 ORTHO05D007109 9.3e-13 77.4 55 63.6
PGR119G1645 Punica granatum HOM05D002401 ORTHO05D007109 1.2e-12 77.0 54 61.1
unitig_52.g17159 Utricularia gibba HOM05D002401 ORTHO05D007109 1.2e-12 77.0 52 57.7
PGR119G2292 Punica granatum HOM05D002401 ORTHO05D007109 1.6e-12 76.6 58 56.9
unitig_52.g16826 Utricularia gibba HOM05D002401 ORTHO05D007109 1.6e-12 76.6 52 55.8
ATR0307G126 Amborella trichopoda HOM05D002401 ORTHO05D007109 3.5e-12 75.5 55 60.0
SGA_v2.0_scaffold304G47925 Striga asiatica HOM05D002401 ORTHO05D007109 4.6e-12 75.1 59 57.6
SHI03518 Sapria himalayana HOM05D002401 ORTHO05D007109 7.9e-12 74.3 48 66.7
ATR0307G043 Amborella trichopoda HOM05D002401 ORTHO05D007109 1.0e-11 73.9 55 60.0
AL2G20100 Arabidopsis lyrata HOM05D002401 ORTHO05D007109 1.3e-11 73.6 55 60.0
Sed0000230 Sechium edule HOM05D002401 ORTHO05D007109 1.3e-11 73.6 55 54.5
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 3.9e-11 72.0 42 71.4
Phvul.007G045700 Phaseolus vulgaris HOM05D002401 ORTHO05D007109 8.7e-11 70.9 54 55.6
SGA_v2.0_scaffold456G51922 Striga asiatica HOM05D002401 ORTHO05D007109 1.9e-10 69.7 50 64.0
Os03g0321800 Oryza sativa ssp. japonica HOM05D002401 ORTHO05D007109 2.5e-10 69.3 55 58.2
arahy.Tifrunner.gnm1.ann1.Y60BUA Arachis hypogaea HOM05D002401 ORTHO05D007109 1.6e-09 66.6 40 70.0
vmacro21025 Vaccinium macrocarpon HOM05D002401 ORTHO05D007109 1.6e-09 66.6 40 77.5
Pp3c27_7140 Physcomitrium patens HOM05D002401 ORTHO05D007109 3.1e-08 62.4 53 50.9
Zm00001eb295550 Zea mays HOM05D002401 ORTHO05D007109 4.0e-08 62.0 65 50.8
Mapoly0010s0076 Marchantia polymorpha HOM05D002401 ORTHO05D007109 2.6e-07 59.3 46 52.2
SMO146G0125 Selaginella moellendorffii HOM05D002401 ORTHO05D007109 7.6e-07 57.8 56 46.4
SEGI_03744 Sequoiadendron giganteum HOM05D002401 ORTHO05D007109 7.6e-07 57.8 55 41.8
CDE09G0839 Ceratophyllum demersum HOM05D002401 ORTHO05D007109 1.7e-06 56.6 40 67.5
PGSC0003DMG400031780 Solanum tuberosum HOM05D002401 ORTHO05D007109 8.4e-06 54.3 36 66.7


User provided reference genes

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