Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 2.8e-185 651.7 322 100.0
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.8e-138 494.6 324 73.5
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.6e-135 485.0 324 72.8
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 6.0e-135 484.6 324 75.0
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.0e-126 457.2 334 69.5
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.5e-125 453.4 324 69.1
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 4.3e-125 451.8 328 69.8
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 9.6e-125 450.7 326 68.1
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 1.6e-124 449.9 324 68.8
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.1e-123 447.2 327 66.4
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 4.1e-123 445.3 350 65.4
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 6.9e-123 444.5 327 67.6
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 1.5e-122 443.4 329 66.6
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.5e-122 443.4 329 66.6
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 1.5e-122 443.4 325 69.2
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 4.5e-122 441.8 331 66.8
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.2e-121 439.5 336 65.2
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.2e-121 439.5 300 72.7
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 6.5e-121 438.0 337 67.1
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 8.4e-121 437.6 327 65.7
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 3.2e-120 435.6 325 68.3
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 5.5e-120 434.9 342 64.6
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 5.5e-120 434.9 339 66.1
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 7.2e-120 434.5 329 65.0
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.2e-119 433.7 324 66.4
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 6.1e-119 431.4 320 66.2
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.8e-118 429.9 326 66.3
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 3.9e-118 428.7 340 63.5
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 8.7e-118 427.6 329 65.0
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 8.7e-118 427.6 335 66.3
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 2.5e-117 426.0 348 63.5
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 3.3e-117 425.6 329 64.1
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 5.7e-117 424.9 329 64.4
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 7.4e-117 424.5 329 67.8
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 7.4e-117 424.5 324 64.8
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 1.3e-116 423.7 387 58.7
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.3e-116 423.7 331 63.7
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 3.7e-116 422.2 330 63.9
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 6.3e-116 421.4 329 67.2
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 8.2e-116 421.0 325 64.9
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 4.1e-115 418.7 331 66.2
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.2e-114 417.2 324 64.2
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 2.0e-114 416.4 331 65.0
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 3.4e-114 415.6 323 65.3
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 3.4e-114 415.6 394 56.3
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 4.5e-114 415.2 330 65.8
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 7.7e-114 414.5 327 65.7
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.0e-113 414.1 332 65.4
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 1.0e-113 414.1 329 63.2
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 1.0e-113 414.1 391 58.6
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 3.8e-113 412.1 386 56.2
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.5e-113 411.0 259 73.4
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 5.5e-112 408.3 362 58.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 2.7e-111 406.0 328 62.5
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 4.6e-111 405.2 331 60.1
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 7.9e-111 404.4 349 62.2
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.0e-110 404.1 358 60.6
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 2.3e-110 402.9 330 59.4
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 3.9e-110 402.1 262 73.7
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.1e-109 400.6 341 58.9
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 5.7e-109 398.3 384 55.5
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 7.4e-109 397.9 331 62.8
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 7.4e-109 397.9 259 71.8
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 9.7e-109 397.5 376 55.9
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 9.7e-109 397.5 332 61.4
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.3e-108 397.1 257 72.4
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 3.7e-108 395.6 259 71.4
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 4.8e-108 395.2 345 57.7
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 5.3e-107 391.7 328 60.4
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 6.9e-107 391.3 353 57.2
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 9.1e-107 391.0 337 59.1
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.0e-106 389.8 324 61.1
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 3.4e-106 389.0 337 59.6
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 4.5e-106 388.7 383 55.6
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.3e-105 387.1 315 62.9
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.5e-104 382.9 330 59.1
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 3.2e-104 382.5 257 70.0
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 4.7e-103 378.6 332 59.6
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 6.7e-102 374.8 223 79.4
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 1.5e-101 373.6 278 63.3
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.8e-100 369.4 331 56.2
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.8e-99 366.7 343 57.1
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.4e-99 366.3 259 68.3
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 1.6e-98 363.6 320 57.5
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 2.6e-98 362.8 340 54.1
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.6e-98 362.8 296 61.1
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 4.2e-96 355.5 281 64.4
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 6.1e-95 351.7 335 53.1
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 2.8e-92 342.8 325 52.6
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 4.8e-92 342.0 325 51.7
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 2.4e-91 339.7 317 55.8
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 9.1e-91 337.8 321 52.0
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.6e-90 337.0 325 51.7
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 2.7e-90 336.3 293 57.3
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.5e-90 335.9 342 54.4
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 5.9e-90 335.1 362 50.0
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 2.5e-88 329.7 322 50.6
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 4.7e-87 325.5 214 70.1
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 6.1e-87 325.1 260 60.8
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 8.0e-87 324.7 207 71.5
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 4.0e-86 322.4 322 49.7
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 2.0e-85 320.1 337 50.1
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 5.9e-82 308.5 322 47.5
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 6.5e-81 305.1 272 58.5
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 1.9e-80 303.5 322 47.5
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 1.9e-80 303.5 322 47.5
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 4.2e-80 302.4 322 47.5
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 2.7e-79 299.7 329 48.3
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 6.1e-79 298.5 322 46.6
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 2.6e-77 293.1 245 62.9
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 2.2e-76 290.0 327 45.9
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 2.8e-76 289.7 322 45.3
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.8e-75 287.0 322 45.0
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 7.0e-75 285.0 322 45.3
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 2.0e-74 283.5 322 45.0
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 7.7e-74 281.6 174 76.4
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 1.4e-70 270.8 176 72.2
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 3.0e-70 269.6 262 49.2
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 9.5e-64 248.1 160 70.6
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 6.8e-62 241.9 159 67.9
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 6.0e-58 228.8 302 43.0
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 1.3e-57 227.6 313 41.2
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.1e-54 218.0 153 68.0
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.1e-50 203.8 150 66.7
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.3e-49 200.3 189 59.3
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 8.6e-41 171.8 113 69.9
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 7.1e-35 152.1 244 37.7
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 9.3e-35 151.8 117 60.7
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 6.9e-30 135.6 120 56.7
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 4.5e-29 132.9 100 66.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.1e-27 128.3 80 70.0
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.4e-22 111.3 59 76.3
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 3.1e-22 110.2 119 49.6
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.0e-22 109.8 122 52.5
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.0e-14 83.2 49 75.5
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.5e-13 81.3 55 63.6
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 3.4e-13 80.1 96 50.0
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 2.5e-11 73.9 55 69.1
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.2e-11 73.6 51 62.7
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 1.0e-09 68.6 371 21.0
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 1.8e-06 57.8 142 28.2
MBI13_g00570_MAGBIO Magnolia biondii HOM05D006479 ORTHO05D008310 4.1e-06 56.6 98 35.7
Sc21g0006530 Simmondsia chinensis HOM05D006479 ORTHO05D008310 9.0e-06 55.5 103 33.0


User provided reference genes

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