Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 2.2e-144 515.8 285 100.0
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 7.0e-95 351.3 271 67.5
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 4.0e-90 335.5 236 69.5
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 1.7e-88 330.1 269 64.7
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 3.7e-88 328.9 290 61.4
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 6.4e-88 328.2 282 61.0
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 6.4e-88 328.2 242 69.4
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 8.3e-88 327.8 234 71.4
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 3.2e-87 325.9 240 68.8
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 1.2e-86 323.9 294 61.2
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 2.7e-86 322.8 244 68.0
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 4.6e-86 322.0 243 66.7
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 7.8e-86 321.2 242 66.9
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 3.0e-85 319.3 242 68.2
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 8.6e-85 317.8 246 66.3
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.6e-85 317.8 242 66.1
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 1.9e-84 316.6 279 60.6
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 1.9e-84 316.6 237 65.8
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 3.3e-84 315.8 242 65.7
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.3e-84 315.8 243 65.4
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 3.3e-84 315.8 242 68.6
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 3.3e-84 315.8 240 67.5
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 1.6e-83 313.5 240 67.5
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 2.1e-83 313.2 228 67.1
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 2.8e-83 312.8 232 67.2
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 3.6e-83 312.4 235 66.4
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.6e-83 312.4 242 64.9
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 6.2e-83 311.6 231 67.1
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 8.1e-83 311.2 240 68.3
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 8.1e-83 311.2 236 64.0
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 1.1e-82 310.8 285 60.0
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 1.4e-82 310.5 240 65.8
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 1.8e-82 310.1 242 68.6
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.4e-82 309.7 230 67.0
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 4.0e-82 308.9 279 59.9
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 4.0e-82 308.9 238 65.1
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 5.2e-82 308.5 235 67.7
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 5.2e-82 308.5 231 67.1
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 5.2e-82 308.5 238 66.8
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 2.0e-81 306.6 284 58.5
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 2.6e-81 306.2 233 67.0
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 4.4e-81 305.4 285 57.2
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 9.9e-81 304.3 239 65.3
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 9.9e-81 304.3 241 65.6
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 9.9e-81 304.3 269 58.7
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 1.3e-80 303.9 232 67.7
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 1.3e-80 303.9 240 65.8
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 1.7e-80 303.5 236 63.6
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 2.9e-80 302.8 241 63.1
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.9e-80 302.8 240 66.2
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.9e-80 302.0 229 65.9
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 6.4e-80 301.6 238 64.3
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 8.4e-80 301.2 269 59.1
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 8.4e-80 301.2 233 66.5
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 1.9e-79 300.1 240 63.3
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.9e-79 300.1 229 65.1
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 3.2e-79 299.3 237 64.6
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 4.2e-79 298.9 238 63.0
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 4.2e-79 298.9 241 63.1
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 4.2e-79 298.9 271 57.9
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 4.2e-79 298.9 242 63.2
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 9.2e-79 297.7 240 60.8
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 9.2e-79 297.7 281 56.6
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.2e-78 297.4 245 64.1
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 1.2e-78 297.4 241 62.7
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 1.2e-78 297.4 271 57.6
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 1.6e-78 297.0 240 65.8
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 2.1e-78 296.6 241 63.9
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 2.7e-78 296.2 241 62.2
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 4.6e-78 295.4 233 64.8
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 4.6e-78 295.4 236 64.0
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 4.6e-78 295.4 296 54.7
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 4.6e-78 295.4 254 60.2
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 1.0e-77 294.3 271 56.8
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.3e-77 293.9 245 62.9
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 1.7e-77 293.5 278 57.2
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.7e-77 293.5 245 62.9
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 3.0e-77 292.7 236 63.6
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 3.0e-77 292.7 245 62.9
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 5.1e-77 292.0 223 65.0
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 5.1e-77 292.0 238 62.2
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 6.6e-77 291.6 240 60.4
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 6.6e-77 291.6 240 61.2
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 6.6e-77 291.6 283 56.9
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 4.3e-76 288.9 232 64.2
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 4.3e-76 288.9 234 62.8
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 5.6e-76 288.5 236 62.3
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 5.6e-76 288.5 239 62.8
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 1.2e-75 287.3 238 60.9
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.1e-75 286.6 231 62.8
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 2.8e-75 286.2 241 60.2
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 3.6e-75 285.8 238 60.5
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 3.6e-75 285.8 238 60.5
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 3.6e-75 285.8 248 59.7
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 6.9e-74 281.6 237 59.5
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.2e-73 280.8 231 61.5
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 1.5e-73 280.4 217 66.8
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.0e-73 280.0 238 60.9
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 2.0e-73 280.0 234 61.1
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 5.8e-73 278.5 227 60.8
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 5.8e-73 278.5 241 59.3
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 1.7e-72 276.9 243 58.0
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.2e-72 276.6 239 60.3
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 8.4e-72 274.6 235 59.1
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.2e-71 272.3 269 53.5
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 5.4e-71 271.9 201 68.7
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 9.3e-71 271.2 248 57.7
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 9.3e-71 271.2 238 60.1
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 3.0e-69 266.2 215 63.3
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 5.6e-68 261.9 195 66.2
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.4e-66 257.3 237 59.1
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 4.0e-66 255.8 233 60.1
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 5.3e-66 255.4 188 68.6
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 2.2e-64 250.0 234 57.7
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.4e-64 248.1 282 50.4
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 5.4e-63 245.4 264 51.9
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 3.9e-61 239.2 245 53.1
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 1.5e-60 237.3 202 62.4
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.6e-59 233.8 243 51.4
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 8.1e-59 231.5 219 54.8
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 1.1e-58 231.1 230 52.2
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.2e-57 227.6 170 67.6
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 1.5e-57 227.3 228 53.5
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 1.5e-57 227.3 242 48.3
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.5e-57 225.7 267 48.7
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 1.7e-56 223.8 248 52.0
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 2.9e-56 223.0 145 72.4
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 4.9e-56 222.2 163 65.0
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 8.4e-56 221.5 144 74.3
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 9.3e-55 218.0 149 69.8
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 9.3e-55 218.0 147 70.7
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 3.0e-53 213.0 152 67.8
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 8.4e-48 194.9 233 48.9
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.9e-44 183.7 156 57.7
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 3.4e-41 172.9 174 50.6
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 4.5e-41 172.6 223 42.2
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 3.2e-39 166.4 174 51.1
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.5e-39 165.6 202 48.5
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 4.6e-38 162.5 147 59.9
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.2e-33 147.9 96 71.9
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 7.7e-33 145.2 129 55.0
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 3.0e-29 133.3 218 38.5
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.3e-27 127.9 97 67.0
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.1e-26 124.8 125 56.0
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 2.6e-25 120.2 243 35.8
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 2.2e-24 117.1 239 33.9
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.0e-21 108.2 76 71.1
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 2.0e-20 104.0 79 70.9
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 2.6e-20 103.6 90 60.0
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.3e-11 74.7 61 62.3
Hund25310 Selenicereus undatus HOM05D004983 ORTHO05D005847 4.2e-07 59.7 92 42.4
Cfa021669 Carpinus fangiana HOM05D004983 ORTHO05D005847 6.1e-06 55.8 186 28.5


User provided reference genes

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