Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 1.1e-126 456.8 255 100.0
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 2.3e-73 279.6 218 66.5
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 1.2e-72 277.3 192 71.9
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 5.7e-72 275.0 190 71.6
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 5.7e-72 275.0 215 66.0
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 1.3e-71 273.9 221 64.3
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 3.7e-71 272.3 221 64.7
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 3.7e-71 272.3 208 69.2
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 3.7e-71 272.3 223 64.6
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 4.9e-71 271.9 226 63.7
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 1.4e-70 270.4 192 69.8
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 1.4e-70 270.4 256 59.4
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 4.1e-70 268.9 241 61.4
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 7.0e-70 268.1 177 72.3
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 2.0e-69 266.5 194 70.1
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 3.5e-69 265.8 241 60.6
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 4.5e-69 265.4 195 69.7
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 4.5e-69 265.4 192 71.4
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 7.8e-69 264.6 192 71.4
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 1.7e-68 263.5 191 69.6
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 1.7e-68 263.5 200 69.0
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 1.7e-68 263.5 177 73.4
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 2.3e-68 263.1 200 66.5
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 6.6e-68 261.5 197 69.5
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 1.1e-67 260.8 195 67.2
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 1.1e-67 260.8 220 62.7
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 1.9e-67 260.0 193 66.8
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 1.9e-67 260.0 200 66.5
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 2.5e-67 259.6 164 75.6
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 3.3e-67 259.2 187 70.1
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 4.3e-67 258.8 196 65.8
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 5.6e-67 258.5 205 67.8
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 9.5e-67 257.7 164 75.6
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 1.2e-66 257.3 217 65.0
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 1.2e-66 257.3 223 61.0
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 1.6e-66 256.9 193 71.5
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 1.6e-66 256.9 230 57.8
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 2.1e-66 256.5 223 61.9
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.1e-66 256.5 242 58.7
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 2.8e-66 256.1 186 69.9
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 3.6e-66 255.8 192 65.6
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 4.7e-66 255.4 192 69.3
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 4.7e-66 255.4 202 65.3
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 6.1e-66 255.0 167 72.5
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 8.0e-66 254.6 191 63.4
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 8.0e-66 254.6 192 64.6
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.0e-65 254.2 190 65.8
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 1.0e-65 254.2 184 69.6
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 1.8e-65 253.4 210 64.8
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 6.8e-65 251.5 214 59.3
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 8.9e-65 251.1 168 72.6
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 1.2e-64 250.8 223 61.0
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 2.6e-64 249.6 177 68.9
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 5.8e-64 248.4 225 60.4
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 9.8e-64 247.7 231 59.7
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 1.3e-63 247.3 217 58.5
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 1.3e-63 247.3 193 68.4
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 1.3e-63 247.3 183 63.9
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 2.2e-63 246.5 213 57.3
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 2.2e-63 246.5 178 68.0
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 2.9e-63 246.1 192 63.0
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 3.7e-63 245.7 192 67.2
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 3.7e-63 245.7 202 59.4
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 3.7e-63 245.7 224 60.7
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 4.9e-63 245.4 222 59.9
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 6.4e-63 245.0 183 65.0
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 1.1e-62 244.2 192 63.0
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 1.1e-62 244.2 192 68.8
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 1.1e-62 244.2 197 62.4
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 1.4e-62 243.8 196 60.7
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 4.1e-62 242.3 192 63.0
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 5.4e-62 241.9 191 64.4
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 7.0e-62 241.5 195 59.5
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 7.0e-62 241.5 185 61.1
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 9.2e-62 241.1 192 62.5
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 2.7e-61 239.6 191 60.2
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 3.5e-61 239.2 163 71.8
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 4.6e-61 238.8 154 72.7
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 6.0e-61 238.4 195 60.5
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 7.8e-61 238.0 195 59.5
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 7.8e-61 238.0 195 59.5
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 1.0e-60 237.7 220 56.4
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 1.0e-60 237.7 220 56.4
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 1.0e-60 237.7 222 57.2
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 1.3e-60 237.3 195 60.0
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 6.6e-60 235.0 192 59.9
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 3.3e-59 232.6 192 60.4
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 3.3e-59 232.6 223 54.7
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 9.5e-59 231.1 165 65.5
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 1.2e-58 230.7 209 59.3
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 1.2e-58 230.7 221 53.8
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 1.6e-58 230.3 192 59.4
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 3.6e-58 229.2 220 54.5
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 2.3e-57 226.5 180 58.9
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 3.1e-57 226.1 192 58.3
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 3.1e-57 226.1 192 58.3
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 4.0e-57 225.7 182 61.0
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 8.9e-57 224.6 183 59.6
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 1.2e-56 224.2 183 59.0
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 3.4e-56 222.6 192 57.3
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 4.4e-56 222.2 183 59.6
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 4.4e-56 222.2 144 73.6
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 4.4e-56 222.2 202 57.9
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 1.7e-55 220.3 165 63.6
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 2.9e-55 219.5 192 56.8
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 5.4e-54 215.3 251 49.8
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 5.6e-51 205.3 179 63.1
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 2.0e-48 196.8 150 66.0
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 3.7e-47 192.6 157 58.0
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 1.2e-45 187.6 154 58.4
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 6.6e-44 181.8 192 51.0
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 1.5e-43 180.6 144 57.6
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 1.9e-43 180.3 125 74.4
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 7.3e-43 178.3 128 71.9
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 3.1e-41 172.9 158 57.6
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 6.8e-41 171.8 129 70.5
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 2.9e-39 166.4 132 64.4
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 7.1e-38 161.8 161 53.4
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 1.3e-36 157.5 95 75.8
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 1.7e-36 157.1 142 56.3
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 4.3e-35 152.5 141 56.7
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 9.6e-35 151.4 142 54.2
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 9.6e-35 151.4 142 54.2
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 1.1e-30 137.9 82 76.8
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 1.1e-30 137.9 146 54.1
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 3.8e-23 112.8 126 53.2
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 2.3e-20 103.6 93 62.4
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 9.6e-19 98.2 98 58.2
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 3.8e-15 86.3 152 32.2
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 5.5e-14 82.4 113 45.1
Cre06.g295826 Chlamydomonas reinhardtii HOM05D005796 ORTHO05D007054 7.4e-11 72.0 129 30.2
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 9.6e-11 71.6 50 64.0
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 5.3e-09 65.9 37 70.3


User provided reference genes

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