Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00756 Aquilegia oxysepala HOM05D002247 ORTHO05D078030 3.3e-43 177.9 88 100.0
Aqoxy3G00798 Aquilegia oxysepala HOM05D002247 ORTHO05D077906 1.9e-14 82.4 83 49.4
PSO063G5922 Papaver somniferum HOM05D002247 ORTHO05D002659 3.1e-09 65.1 80 42.5
Dinv36685 Davidia involucrata HOM05D002247 ORTHO05D002659 2.6e-08 62.0 78 39.7
Gohir.A06G091500 Gossypium hirsutum HOM05D002247 ORTHO05D002659 5.9e-08 60.8 78 38.5
unitig_748.g8266 Utricularia gibba HOM05D002247 ORTHO05D002659 7.7e-08 60.5 81 37.0
Cc08_g09910 Coffea canephora HOM05D002247 ORTHO05D002659 1.0e-07 60.1 78 38.5
Gohir.D06G090800 Gossypium hirsutum HOM05D002247 ORTHO05D002659 1.0e-07 60.1 78 38.5
Gorai.010G104600 Gossypium raimondii HOM05D002247 ORTHO05D002659 1.0e-07 60.1 78 38.5
CDE02G1551 Ceratophyllum demersum HOM05D002247 ORTHO05D002659 1.3e-07 59.7 78 37.2
BcaB01g05467 Brassica carinata HOM05D002247 ORTHO05D002659 1.7e-07 59.3 78 38.5
BraA03t09847Z Brassica rapa HOM05D002247 ORTHO05D002659 1.7e-07 59.3 78 38.5
Sopen11g016650 Solanum pennellii HOM05D002247 ORTHO05D002659 1.7e-07 59.3 78 39.7
PGSC0003DMG400019767 Solanum tuberosum HOM05D002247 ORTHO05D002659 1.7e-07 59.3 78 39.7
vmacro10851 Vaccinium macrocarpon HOM05D002247 ORTHO05D002659 1.7e-07 59.3 74 39.2
CANSAT80G0857 Cannabis sativa HOM05D002247 ORTHO05D002659 2.2e-07 58.9 78 38.5
DCAR_001731 Daucus carota HOM05D002247 ORTHO05D002659 2.2e-07 58.9 78 38.5
Duzib168G1230 Durio zibethinus HOM05D002247 ORTHO05D002659 2.2e-07 58.9 78 38.5
Lsat_1_v5_gn_8_98400 Lactuca sativa HOM05D002247 ORTHO05D002659 2.2e-07 58.9 78 37.2
Nitab4.5_0005356g0010 Nicotiana tabacum HOM05D002247 ORTHO05D002659 2.2e-07 58.9 78 39.7
Solyc11g039910.2 Solanum lycopersicum HOM05D002247 ORTHO05D002659 2.2e-07 58.9 78 39.7
Atru.chr7.2054 Acer truncatum HOM05D002247 ORTHO05D002659 2.9e-07 58.5 78 37.2
MSTRG.26385 Avicennia marina HOM05D002247 ORTHO05D002659 2.9e-07 58.5 78 38.5
CAN.G1323.15 Capsicum annuum HOM05D002247 ORTHO05D002659 2.9e-07 58.5 78 38.5
Ciclev10009418m.g Citrus clementina HOM05D002247 ORTHO05D002659 2.9e-07 58.5 78 37.2
Duzib150G0910 Durio zibethinus HOM05D002247 ORTHO05D002659 2.9e-07 58.5 78 37.2
Gohir.A05G045300 Gossypium hirsutum HOM05D002247 ORTHO05D002659 2.9e-07 58.5 78 37.2
Gohir.D05G047000 Gossypium hirsutum HOM05D002247 ORTHO05D002659 2.9e-07 58.5 78 37.2
Gorai.009G048300 Gossypium raimondii HOM05D002247 ORTHO05D002659 2.9e-07 58.5 78 37.2
Peaxi162Scf00473g10011 Petunia axillaris HOM05D002247 ORTHO05D002659 2.9e-07 58.5 78 38.5
TWI63G0517 Tripterygium wilfordii HOM05D002247 ORTHO05D002659 2.9e-07 58.5 78 38.5
TAR626G1205 Trochodendron aralioides HOM05D002247 ORTHO05D002659 2.9e-07 58.5 78 38.5
COL.COLO4_21000 Corchorus olitorius HOM05D002247 ORTHO05D002659 3.8e-07 58.2 78 37.2
DCAR_031997 Daucus carota HOM05D002247 ORTHO05D002659 3.8e-07 58.2 78 37.2
Thhalv10015000m.g Eutrema salsugineum HOM05D002247 ORTHO05D002659 3.8e-07 58.2 78 37.2
Gohir.D13G193700 Gossypium hirsutum HOM05D002247 ORTHO05D002659 3.8e-07 58.2 78 37.2
Gorai.013G219800 Gossypium raimondii HOM05D002247 ORTHO05D002659 3.8e-07 58.2 78 37.2
Sp6g31920 Schrenkiella parvula HOM05D002247 ORTHO05D002659 3.8e-07 58.2 78 38.5
Sc08g0008020 Simmondsia chinensis HOM05D002247 ORTHO05D002659 3.8e-07 58.2 78 37.2
Solyc06g082270.2 Solanum lycopersicum HOM05D002247 ORTHO05D002659 3.8e-07 58.2 78 38.5
TWI32G0407 Tripterygium wilfordii HOM05D002247 ORTHO05D002659 3.8e-07 58.2 78 37.2
TAR383G0314 Trochodendron aralioides HOM05D002247 ORTHO05D002659 3.8e-07 58.2 78 38.5
Aa31LG3G15510 Aethionema arabicum HOM05D002247 ORTHO05D002659 5.0e-07 57.8 78 37.2
CSS0026258 Camellia sinensis var. sinensis HOM05D002247 ORTHO05D002659 5.0e-07 57.8 78 37.2
CSS0032590 Camellia sinensis var. sinensis HOM05D002247 ORTHO05D002659 5.0e-07 57.8 78 37.2
PSO210G2193 Papaver somniferum HOM05D002247 ORTHO05D002659 5.0e-07 57.8 78 37.2
PGSC0003DMG400030451 Solanum tuberosum HOM05D002247 ORTHO05D002659 5.0e-07 57.8 78 38.5
THA.LOC104811079 Tarenaya hassleriana HOM05D002247 ORTHO05D002659 5.0e-07 57.8 78 34.6
HPP92_006364 Vanilla planifolia HOM05D002247 ORTHO05D002659 5.0e-07 57.8 78 35.9
Aqoxy3G00797 Aquilegia oxysepala HOM05D002247 ORTHO05D078731 6.5e-07 57.4 82 40.2
MSTRG.11683 Avicennia marina HOM05D002247 ORTHO05D002659 6.5e-07 57.4 78 37.2
CSS0012697 Camellia sinensis var. sinensis HOM05D002247 ORTHO05D002659 6.5e-07 57.4 78 35.9
Dinv23395 Davidia involucrata HOM05D002247 ORTHO05D002659 6.5e-07 57.4 78 37.2
Duzib187G0937 Durio zibethinus HOM05D002247 ORTHO05D002659 6.5e-07 57.4 78 35.9
HanXRQChr03g0081031 Helianthus annuus HOM05D002247 ORTHO05D002659 6.5e-07 57.4 78 35.9
Lj7A666T75 Lonicera japonica HOM05D002247 ORTHO05D002659 6.5e-07 57.4 78 37.2
MBI14_g02795_MAGBIO Magnolia biondii HOM05D002247 ORTHO05D002659 6.5e-07 57.4 79 36.7
Nn4g24937 Nelumbo nucifera HOM05D002247 ORTHO05D002659 6.5e-07 57.4 78 37.2
Nitab4.5_0003324g0050 Nicotiana tabacum HOM05D002247 ORTHO05D002659 6.5e-07 57.4 78 39.7
PSO210G6201 Papaver somniferum HOM05D002247 ORTHO05D002659 6.5e-07 57.4 78 37.2
SalBow4G1966 Salvia bowleyana HOM05D002247 ORTHO05D002659 6.5e-07 57.4 78 37.2
Actinidia18213 Actinidia chinensis HOM05D002247 ORTHO05D002659 8.5e-07 57.0 78 37.2
CSS0029229 Camellia sinensis var. sinensis HOM05D002247 ORTHO05D002659 8.5e-07 57.0 78 37.2
CARHR132180 Cardamine hirsuta HOM05D002247 ORTHO05D002659 8.5e-07 57.0 78 35.9
PSO455G0055 Papaver somniferum HOM05D002247 ORTHO05D002659 8.5e-07 57.0 78 37.2
PSO541G5509 Papaver somniferum HOM05D002247 ORTHO05D002659 8.5e-07 57.0 78 37.2
PSO675G2862 Papaver somniferum HOM05D002247 ORTHO05D002659 8.5e-07 57.0 78 37.2
Aqoxy3G00781 Aquilegia oxysepala HOM05D002247 ORTHO05D078150 1.1e-06 56.6 78 39.7
Ca_25574_v3 Cicer arietinum L. HOM05D002247 ORTHO05D002659 1.1e-06 56.6 76 38.2
ECA240G0152 Erigeron canadensis HOM05D002247 ORTHO05D002659 1.1e-06 56.6 78 35.9
Peaxi162Scf00720g00045 Petunia axillaris HOM05D002247 ORTHO05D002659 1.1e-06 56.6 78 35.9
Rhsim07G0145400 Rhododendron simsii HOM05D002247 ORTHO05D002659 1.1e-06 56.6 78 37.2
Sopen06g033650 Solanum pennellii HOM05D002247 ORTHO05D002659 1.1e-06 56.6 78 37.2
SGA_v2.0_scaffold512G52638 Striga asiatica HOM05D002247 ORTHO05D002659 1.1e-06 56.6 78 37.2
THA.LOC104807535 Tarenaya hassleriana HOM05D002247 ORTHO05D002659 1.1e-06 56.6 78 34.6
CANSAT64G2802 Cannabis sativa HOM05D002247 ORTHO05D002659 1.4e-06 56.2 78 37.2
Carub.0006s1019 Capsella rubella HOM05D002247 ORTHO05D002659 1.4e-06 56.2 79 34.2
ClCG03G016130 Citrullus lanatus HOM05D002247 ORTHO05D002659 1.4e-06 56.2 78 35.9
Migut.A00183 Erythranthe guttata HOM05D002247 ORTHO05D002659 1.4e-06 56.2 78 37.2
Hma1.2p1_0571F.1_g180640 Hydrangea macrophylla HOM05D002247 ORTHO05D002659 1.4e-06 56.2 78 34.6
Nitab4.5_0000363g0100 Nicotiana tabacum HOM05D002247 ORTHO05D002659 1.4e-06 56.2 78 38.5
QL02p041557 Quercus lobata HOM05D002247 ORTHO05D002659 1.4e-06 56.2 78 34.6
SalBow7G0882 Salvia bowleyana HOM05D002247 ORTHO05D002659 1.4e-06 56.2 78 35.9
SGA_v2.0_scaffold103G30036 Striga asiatica HOM05D002247 ORTHO05D002659 1.4e-06 56.2 78 35.9
THA.LOC104811262 Tarenaya hassleriana HOM05D002247 ORTHO05D002659 1.4e-06 56.2 78 37.2
Thecc.09G047900 Theobroma cacao HOM05D002247 ORTHO05D002659 1.4e-06 56.2 76 38.2
MSTRG.10601 Avicennia marina HOM05D002247 ORTHO05D002659 1.9e-06 55.8 78 37.2
Carub.0001s1986 Capsella rubella HOM05D002247 ORTHO05D002659 1.9e-06 55.8 78 33.3
ClCG11G002130 Citrullus lanatus HOM05D002247 ORTHO05D002659 1.9e-06 55.8 78 35.9
COL.COLO4_34742 Corchorus olitorius HOM05D002247 ORTHO05D002659 1.9e-06 55.8 78 34.6
MELO3C004589.2 Cucumis melo HOM05D002247 ORTHO05D002659 1.9e-06 55.8 78 35.9
CsaV3_2G001910 Cucumis sativus L. HOM05D002247 ORTHO05D002659 1.9e-06 55.8 78 35.9
Gohir.A13G186900 Gossypium hirsutum HOM05D002247 ORTHO05D002659 1.9e-06 55.8 78 35.9
HanXRQChr13g0411141 Helianthus annuus HOM05D002247 ORTHO05D002659 1.9e-06 55.8 78 35.9
Manes.03G027100 Manihot esculenta HOM05D002247 ORTHO05D002659 1.9e-06 55.8 78 34.6
Manes.16G108800 Manihot esculenta HOM05D002247 ORTHO05D002659 1.9e-06 55.8 78 34.6
Nitab4.5_0000771g0050 Nicotiana tabacum HOM05D002247 ORTHO05D002659 1.9e-06 55.8 76 38.2
Psat5g240400 Pisum sativum HOM05D002247 ORTHO05D002659 1.9e-06 55.8 76 38.2
HPP92_011507 Vanilla planifolia HOM05D002247 ORTHO05D002659 1.9e-06 55.8 78 35.9
VMungo0464G0745 Vigna mungo HOM05D002247 ORTHO05D002659 1.9e-06 55.8 76 35.5
BcaC07g39032 Brassica carinata HOM05D002247 ORTHO05D002659 2.5e-06 55.5 78 30.8
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 2.5e-06 55.5 71 38.0
C08p20110 Brassica napus HOM05D002247 ORTHO05D002659 2.5e-06 55.5 78 30.8
BolC8t49644H Brassica oleracea HOM05D002247 ORTHO05D002659 2.5e-06 55.5 78 30.8
Lj7P697T54 Lonicera japonica HOM05D002247 ORTHO05D002659 2.5e-06 55.5 78 37.2
MBI18_g09645_MAGBIO Magnolia biondii HOM05D002247 ORTHO05D002659 2.5e-06 55.5 78 35.9
MBI18_g10391_MAGBIO Magnolia biondii HOM05D002247 ORTHO05D002659 2.5e-06 55.5 78 35.9
Thecc.09G100500 Theobroma cacao HOM05D002247 ORTHO05D002659 2.5e-06 55.5 78 34.6
Zm00001eb327010 Zea mays HOM05D002247 ORTHO05D002659 2.5e-06 55.5 78 34.6
Migut.K00543 Erythranthe guttata HOM05D002247 ORTHO05D002659 3.2e-06 55.1 78 34.6
Thhalv10008738m.g Eutrema salsugineum HOM05D002247 ORTHO05D002659 3.2e-06 55.1 78 33.3
SGA_v2.0_scaffold19G08726 Striga asiatica HOM05D002247 ORTHO05D002659 3.2e-06 55.1 78 37.2
CAN.G1323.16 Capsicum annuum HOM05D002247 ORTHO05D002659 4.2e-06 54.7 78 35.9
CARHR201530 Cardamine hirsuta HOM05D002247 ORTHO05D002659 4.2e-06 54.7 78 37.2
Cpa.g.sc78.20 Carica papaya HOM05D002247 ORTHO05D002659 4.2e-06 54.7 78 33.3
CiPaw.04G157800 Carya illinoinensis HOM05D002247 ORTHO05D002659 4.2e-06 54.7 78 34.6
Duzib168G0698 Durio zibethinus HOM05D002247 ORTHO05D002659 4.2e-06 54.7 79 34.2
Glyma.20G017300 Glycine max HOM05D002247 ORTHO05D002659 4.2e-06 54.7 76 36.8
Lsat_1_v5_gn_5_144881 Lactuca sativa HOM05D002247 ORTHO05D002659 4.2e-06 54.7 78 34.6
Os07g0604500 Oryza sativa ssp. japonica HOM05D002247 ORTHO05D002659 4.2e-06 54.7 78 35.9
SMO119G0434 Selaginella moellendorffii HOM05D002247 ORTHO05D002659 4.2e-06 54.7 78 35.9
GSVIVG01015301001 Vitis vinifera HOM05D002247 ORTHO05D002659 4.2e-06 54.7 78 34.6
BcaC07g39031 Brassica carinata HOM05D002247 ORTHO05D002659 5.5e-06 54.3 78 32.1
A08p29410 Brassica napus HOM05D002247 ORTHO05D002659 5.5e-06 54.3 78 30.8
CiPaw.03G225200 Carya illinoinensis HOM05D002247 ORTHO05D002659 5.5e-06 54.3 78 34.6
Ciclev10009399m.g Citrus clementina HOM05D002247 ORTHO05D002659 5.5e-06 54.3 78 33.3
Lalb_Chr24g0397291 Lupinus albus HOM05D002247 ORTHO05D002659 5.5e-06 54.3 78 34.6
Mapoly0028s0095 Marchantia polymorpha HOM05D002247 ORTHO05D002659 5.5e-06 54.3 78 35.9
Nn6g35330 Nelumbo nucifera HOM05D002247 ORTHO05D002659 5.5e-06 54.3 78 35.9
Nn8g39060 Nelumbo nucifera HOM05D002247 ORTHO05D002659 5.5e-06 54.3 78 35.9
SHI02685 Sapria himalayana HOM05D002247 ORTHO05D002659 5.5e-06 54.3 78 34.6
Sed0018872 Sechium edule HOM05D002247 ORTHO05D002659 5.5e-06 54.3 78 34.6
AagrBONN_evm.TU.Sc2ySwM_228.5246 Anthoceros agrestis HOM05D002247 ORTHO05D002659 7.2e-06 53.9 79 34.2
BcaB03g12869 Brassica carinata HOM05D002247 ORTHO05D002659 7.2e-06 53.9 78 30.8
BraA08t34877Z Brassica rapa HOM05D002247 ORTHO05D002659 7.2e-06 53.9 78 30.8
Ca_29574_v3 Cicer arietinum L. HOM05D002247 ORTHO05D002659 7.2e-06 53.9 76 35.5
MD02G1065800 Malus domestica HOM05D002247 ORTHO05D002659 7.2e-06 53.9 78 34.6
MD15G1196700 Malus domestica HOM05D002247 ORTHO05D002659 7.2e-06 53.9 78 34.6
Psat7g129040 Pisum sativum HOM05D002247 ORTHO05D002659 7.2e-06 53.9 76 35.5
Potri.006G164980 Populus trichocarpa HOM05D002247 ORTHO05D002659 7.2e-06 53.9 78 33.3
Prupe.4G283200 Prunus persica HOM05D002247 ORTHO05D002659 7.2e-06 53.9 78 34.6
Prupe.5G013800 Prunus persica HOM05D002247 ORTHO05D002659 7.2e-06 53.9 78 34.6
RcHm_v2.0_Chr3g0491401 Rosa chinensis HOM05D002247 ORTHO05D002659 7.2e-06 53.9 78 34.6
Sabra06G0126400 Salix brachista HOM05D002247 ORTHO05D002659 7.2e-06 53.9 78 33.3
SEGI_28118 Sequoiadendron giganteum HOM05D002247 ORTHO05D002659 7.2e-06 53.9 78 37.2
Zm00001eb108820 Zea mays HOM05D002247 ORTHO05D002659 7.2e-06 53.9 78 33.3
MELO3C015413.2 Cucumis melo HOM05D002247 ORTHO05D002659 9.4e-06 53.5 78 34.6
CsaV3_1G039810 Cucumis sativus L. HOM05D002247 ORTHO05D002659 9.4e-06 53.5 78 34.6
PGR102G1463 Punica granatum HOM05D002247 ORTHO05D002659 9.4e-06 53.5 78 33.3
TPR.G38349 Trifolium pratense HOM05D002247 ORTHO05D002659 9.4e-06 53.5 76 34.2


User provided reference genes

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