Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.1e-268 929.5 482 100.0
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.2e-267 926.0 482 99.4
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.1e-177 627.1 474 69.8
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 1.9e-172 609.8 479 67.6
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 6.8e-167 591.3 471 66.9
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 2.7e-163 579.3 471 65.6
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 3.0e-154 549.3 485 61.6
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 3.9e-154 548.9 475 62.1
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 8.1e-152 541.2 469 62.0
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.1e-151 540.8 471 63.7
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 3.4e-150 535.8 473 61.9
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 5.8e-150 535.0 476 60.7
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.2e-147 527.3 472 61.7
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 2.1e-147 526.6 473 60.5
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 7.9e-147 524.6 468 61.5
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.0e-146 524.2 457 63.7
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 3.0e-146 522.7 472 61.2
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 3.0e-146 522.7 462 60.2
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.5e-145 520.4 475 60.4
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 5.6e-145 518.5 467 60.2
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.8e-143 513.5 472 60.6
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 2.4e-143 513.1 473 59.4
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 2.4e-143 513.1 481 58.8
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 4.0e-143 512.3 457 60.8
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 2.9e-141 506.1 468 61.5
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 3.8e-141 505.8 465 58.3
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 4.9e-141 505.4 432 65.0
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 8.4e-141 504.6 468 57.5
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 4.2e-140 502.3 469 59.9
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 3.5e-139 499.2 471 58.8
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.0e-139 498.4 479 56.4
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.8e-138 496.9 474 57.2
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.8e-138 496.9 473 56.2
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 6.7e-138 495.0 430 61.9
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 1.1e-137 494.2 470 58.7
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.6e-137 491.9 472 56.1
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 5.6e-137 491.9 474 56.5
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 9.6e-137 491.1 475 57.9
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 6.2e-136 488.4 474 55.7
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 6.2e-136 488.4 470 55.5
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 8.2e-136 488.0 473 55.2
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 1.1e-135 487.6 474 58.2
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.4e-135 487.3 470 56.2
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.8e-135 486.9 478 58.6
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.0e-134 483.4 470 55.3
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 7.6e-134 481.5 474 57.6
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.7e-133 480.3 471 55.6
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 2.9e-133 479.6 468 55.6
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 4.9e-133 478.8 470 56.2
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 8.4e-133 478.0 469 57.4
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 3.2e-132 476.1 469 55.2
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 9.3e-132 474.6 476 55.3
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.2e-131 474.2 469 55.2
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 1.2e-131 474.2 469 55.0
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 1.6e-131 473.8 476 55.3
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 3.5e-131 472.6 476 54.8
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.0e-130 471.1 472 54.7
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.8e-130 470.3 469 55.0
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 3.9e-130 469.2 476 55.7
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 8.7e-130 468.0 495 52.7
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-129 467.2 477 54.5
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 4.3e-129 465.7 469 54.6
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 4.3e-129 465.7 469 54.6
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 2.2e-128 463.4 393 63.4
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.8e-127 460.3 697 42.8
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 6.9e-127 458.4 393 61.8
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.3e-125 454.1 473 55.6
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 2.9e-125 453.0 473 54.5
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 6.5e-125 451.8 412 59.7
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 2.1e-123 446.8 394 59.1
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 4.6e-123 445.7 380 62.6
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.3e-122 443.4 433 55.7
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 3.7e-120 436.0 470 53.8
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.8e-119 433.7 509 50.7
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 4.1e-119 432.6 470 51.5
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 5.0e-117 425.6 436 54.8
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 7.2e-116 421.8 400 56.8
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.7e-115 419.9 433 53.8
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 3.6e-115 419.5 532 48.7
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 1.8e-114 417.2 450 53.8
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 2.6e-113 413.3 469 52.0
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.4e-113 411.8 554 45.5
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 1.4e-111 407.5 322 65.8
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 8.5e-109 398.3 393 56.7
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 4.2e-108 396.0 404 55.0
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 3.6e-107 392.9 414 54.3
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.0e-106 391.3 436 51.8
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.4e-103 380.9 478 47.1
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 2.4e-103 380.2 354 58.5
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 7.7e-102 375.2 495 47.3
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 7.2e-100 368.6 393 55.7
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 3.6e-99 366.3 290 65.2
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.4e-98 364.4 491 46.8
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.4e-95 354.4 468 47.2
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 4.1e-95 352.8 512 46.9
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 5.3e-95 352.4 291 62.9
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 2.1e-91 340.5 349 54.2
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 4.0e-90 336.3 408 47.5
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 2.8e-88 330.1 377 52.0
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 7.0e-87 325.5 254 65.4
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.3e-85 321.2 285 60.4
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 2.5e-84 317.0 485 41.9
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.2e-83 314.7 264 61.7
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.7e-83 312.8 325 54.5
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.0e-82 311.6 299 55.5
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 2.6e-81 307.0 331 53.2
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 2.9e-72 276.9 447 38.3
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 1.9e-71 274.2 518 37.6
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 1.2e-70 271.6 226 61.1
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.6e-70 271.2 381 44.9
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.0e-69 266.9 320 51.9
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 8.0e-67 258.8 242 56.6
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 7.8e-62 242.3 169 70.4
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 8.6e-61 238.8 302 48.0
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.8e-58 231.1 211 60.2
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.9e-58 228.8 312 46.2
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.1e-45 186.4 434 34.3
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.1e-43 181.0 118 72.0
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 6.2e-43 179.5 558 30.3
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.9e-39 167.9 182 52.2
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.4e-39 167.5 159 57.2
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 2.5e-36 157.5 557 29.6
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.0e-29 135.6 158 48.1
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 5.6e-28 129.8 384 30.2
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.2e-27 126.3 170 46.5
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.5e-20 105.1 158 43.0
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.9e-20 104.8 68 80.9
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 7.4e-20 102.8 158 40.5
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 8.2e-19 99.4 127 44.9
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 1.8e-18 98.2 150 44.0
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 2.4e-18 97.8 112 54.5
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-17 95.1 75 62.7
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-17 95.1 75 62.7
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.4e-17 94.0 75 61.3
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.3e-16 92.0 75 62.7
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 1.4e-15 88.6 121 42.1
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 4.6e-14 83.6 54 77.8
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 1.8e-13 81.6 83 53.0
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 3.3e-12 77.4 84 54.8
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 3.3e-12 77.4 85 50.6
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 3.1e-10 70.9 55 61.8
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 2.6e-09 67.8 46 69.6
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-07 62.4 47 59.6


User provided reference genes

Program Settings