Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 3.5e-127 458.4 245 100.0
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.5e-69 266.9 244 61.1
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.7e-65 253.4 250 55.2
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 8.5e-65 251.1 246 55.7
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 2.7e-63 246.1 247 55.9
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 4.7e-63 245.4 243 54.3
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 8.0e-63 244.6 224 56.7
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.8e-62 243.4 248 54.4
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.8e-62 243.4 246 55.7
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 3.0e-62 242.7 244 55.7
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 5.2e-62 241.9 245 53.5
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 6.8e-62 241.5 244 55.7
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 7.5e-61 238.0 246 53.7
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.2e-60 236.5 224 54.9
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 2.8e-60 236.1 248 52.0
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 2.8e-60 236.1 216 56.9
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 4.8e-60 235.3 235 55.3
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 1.4e-59 233.8 242 51.7
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 3.1e-59 232.6 244 52.5
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 9.1e-59 231.1 245 52.7
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 1.2e-58 230.7 241 52.7
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 1.6e-58 230.3 247 51.8
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 2.7e-58 229.6 198 60.1
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 3.5e-58 229.2 215 55.8
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 4.5e-58 228.8 244 52.9
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 5.9e-58 228.4 248 52.0
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 5.9e-58 228.4 246 51.6
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 7.7e-58 228.0 246 49.2
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.3e-57 227.3 245 51.0
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 2.9e-57 226.1 246 52.0
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 3.8e-57 225.7 215 58.1
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 5.0e-57 225.3 246 52.0
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.0e-57 225.3 246 51.2
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.0e-57 225.3 246 51.2
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 6.5e-57 224.9 245 48.2
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 6.5e-57 224.9 247 53.0
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 6.5e-57 224.9 252 50.4
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.1e-56 224.2 246 50.8
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 1.1e-56 224.2 245 49.8
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 1.5e-56 223.8 248 48.8
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.5e-56 223.8 246 50.8
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 1.5e-56 223.8 213 54.9
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 1.5e-56 223.8 245 49.0
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 9.5e-56 221.1 246 50.4
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 1.6e-55 220.3 245 48.6
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 2.1e-55 219.9 213 55.4
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 2.1e-55 219.9 246 47.6
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 6.1e-55 218.4 244 48.4
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 8.0e-55 218.0 244 48.0
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 8.0e-55 218.0 225 54.7
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 8.0e-55 218.0 247 48.6
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 1.0e-54 217.6 224 53.6
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.3e-54 216.5 219 53.0
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 2.3e-54 216.5 244 48.0
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.0e-54 216.1 244 48.8
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 3.0e-54 216.1 223 52.5
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 4.0e-54 215.7 219 53.4
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 4.0e-54 215.7 248 47.6
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 6.8e-54 214.9 198 53.5
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.5e-53 213.8 245 47.3
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 1.5e-53 213.8 214 53.7
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 2.0e-53 213.4 248 47.6
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.6e-53 213.0 211 55.5
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 4.4e-53 212.2 247 49.4
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 7.5e-53 211.5 246 50.4
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 7.5e-53 211.5 220 53.2
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 7.5e-53 211.5 247 49.0
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 1.3e-52 210.7 196 56.1
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 1.7e-52 210.3 249 48.6
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.2e-52 209.9 220 54.1
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 3.7e-52 209.1 244 49.2
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 3.7e-52 209.1 247 49.4
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 6.3e-52 208.4 246 49.6
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 6.3e-52 208.4 249 48.6
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 1.1e-51 207.6 211 50.7
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 1.1e-51 207.6 248 47.2
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 1.1e-51 207.6 215 51.6
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.4e-51 206.5 215 54.0
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 1.2e-50 204.1 214 53.7
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.6e-50 203.8 248 46.0
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 2.7e-50 203.0 236 47.0
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 3.5e-50 202.6 245 47.3
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 5.9e-50 201.8 250 46.8
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.0e-49 201.1 213 49.8
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.0e-49 201.1 277 42.6
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 1.7e-49 200.3 213 47.4
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 1.7e-49 200.3 245 45.3
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 2.3e-49 199.9 213 46.5
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 2.3e-49 199.9 216 48.1
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.9e-49 199.5 245 45.7
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 3.8e-49 199.1 209 46.9
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 3.8e-49 199.1 245 47.3
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 3.8e-49 199.1 236 47.9
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 5.0e-49 198.7 213 46.5
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 5.0e-49 198.7 213 46.5
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 6.6e-49 198.4 213 47.9
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 1.5e-48 197.2 214 52.3
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 1.5e-48 197.2 213 46.5
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.5e-48 197.2 260 45.0
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.5e-48 197.2 260 45.0
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 1.5e-48 197.2 213 47.4
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 1.9e-48 196.8 213 47.4
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 2.5e-48 196.4 209 46.4
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 3.3e-48 196.1 260 44.6
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 3.3e-48 196.1 245 44.1
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 9.5e-48 194.5 219 47.9
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 3.6e-47 192.6 221 47.5
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 6.1e-47 191.8 221 46.6
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 8.9e-46 188.0 198 50.0
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.5e-45 187.2 259 42.5
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.0e-45 186.8 278 42.1
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 5.7e-45 185.3 220 41.8
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 9.2e-43 177.9 200 47.0
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.3e-41 174.1 163 54.0
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 3.0e-41 172.9 265 43.4
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 6.6e-41 171.8 216 46.3
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.9e-40 170.2 200 45.0
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 8.0e-39 164.9 161 53.4
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 1.4e-38 164.1 143 60.1
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.4e-38 164.1 205 44.9
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 4.0e-38 162.5 215 47.4
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 4.9e-36 155.6 256 39.1
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 1.9e-35 153.7 164 46.3
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.0e-34 150.2 251 40.6
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 1.3e-33 147.5 250 39.2
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 3.9e-33 146.0 247 34.8
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 1.9e-32 143.7 157 50.3
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.2e-31 141.0 243 38.3
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 6.2e-31 138.7 250 38.8
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 6.8e-30 135.2 212 39.6
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.6e-29 133.3 202 39.6
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.3e-28 131.0 203 39.4
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.3e-28 131.0 171 42.1
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.6e-26 124.0 223 37.7
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.6e-18 97.4 135 40.7
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 6.0e-18 95.5 95 55.8
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 2.3e-17 93.6 165 37.6
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 4.2e-11 72.8 107 40.2
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 3.5e-10 69.7 71 46.5
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 4.6e-10 69.3 180 30.0
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 4.6e-10 69.3 114 37.7
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 6.2e-07 58.9 36 72.2


User provided reference genes

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