Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.7e-72 276.2 167 100.0
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 1.9e-31 139.8 163 55.2
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 5.1e-29 131.7 174 58.0
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 5.1e-29 131.7 174 58.0
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.1e-28 130.6 174 58.0
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 1.5e-28 130.2 174 55.7
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.7e-27 126.7 166 46.4
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 3.7e-27 125.6 172 44.2
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 6.3e-27 124.8 171 52.0
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 3.1e-26 122.5 166 56.0
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 1.5e-25 120.2 177 50.3
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 2.0e-25 119.8 170 54.1
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 7.7e-25 117.9 169 56.8
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 1.0e-24 117.5 166 57.8
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 1.7e-24 116.7 172 54.7
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 2.2e-24 116.3 173 55.5
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 1.4e-23 113.6 171 49.7
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 2.5e-23 112.8 171 55.6
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 5.5e-23 111.7 172 55.8
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 9.4e-23 110.9 174 53.4
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 9.4e-23 110.9 167 53.9
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 2.1e-22 109.8 177 55.4
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 3.6e-22 109.0 163 59.5
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 3.6e-22 109.0 169 52.1
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 8.0e-22 107.8 168 47.6
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 1.8e-21 106.7 174 54.6
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 1.8e-21 106.7 171 46.8
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 1.8e-21 106.7 169 51.5
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 2.3e-21 106.3 129 62.8
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 3.0e-21 105.9 177 52.5
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 5.2e-21 105.1 174 53.4
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 5.2e-21 105.1 128 62.5
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.7e-21 104.8 128 50.8
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 8.8e-21 104.4 166 54.8
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 8.8e-21 104.4 170 49.4
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 2.0e-20 103.2 171 53.2
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 3.3e-20 102.4 170 53.5
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 4.4e-20 102.1 173 39.9
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 7.4e-20 101.3 175 52.0
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.7e-19 100.1 166 38.6
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.7e-19 100.1 166 38.6
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 2.8e-19 99.4 137 56.2
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 2.8e-19 99.4 170 52.9
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 6.3e-19 98.2 169 47.3
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 1.1e-18 97.4 167 50.9
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 2.4e-18 96.3 135 40.7
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.1e-18 95.9 170 50.6
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 3.1e-18 95.9 170 50.6
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 4.1e-18 95.5 117 50.4
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 1.6e-17 93.6 162 38.3
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 2.6e-17 92.8 166 36.7
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 2.6e-17 92.8 166 36.7
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 2.6e-17 92.8 171 53.8
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 2.6e-17 92.8 171 49.1
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.5e-17 92.4 170 50.0
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.5e-17 92.4 173 39.9
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 3.5e-17 92.4 173 39.9
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 3.5e-17 92.4 176 47.7
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 7.7e-17 91.3 134 56.7
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 1.3e-16 90.5 178 50.0
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 1.7e-16 90.1 173 50.3
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 1.7e-16 90.1 175 49.1
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 1.7e-16 90.1 163 54.6
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 2.9e-16 89.4 164 39.0
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 2.9e-16 89.4 134 57.5
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 3.8e-16 89.0 165 51.5
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 5.0e-16 88.6 161 37.9
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.0e-16 88.6 173 43.9
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 5.0e-16 88.6 167 52.1
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 5.0e-16 88.6 178 49.4
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 8.5e-16 87.8 162 52.5
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 8.5e-16 87.8 173 38.7
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.1e-15 87.4 178 37.6
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.1e-15 87.4 173 39.9
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 1.5e-15 87.0 162 36.4
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 1.5e-15 87.0 174 50.6
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.9e-15 86.7 114 46.5
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 1.9e-15 86.7 173 49.7
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 1.9e-15 86.7 172 40.1
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 2.5e-15 86.3 165 35.8
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 2.5e-15 86.3 171 52.0
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 4.2e-15 85.5 167 53.9
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 4.2e-15 85.5 167 53.9
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 7.2e-15 84.7 162 36.4
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 7.2e-15 84.7 162 36.4
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 7.2e-15 84.7 170 51.8
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 7.2e-15 84.7 178 43.3
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 1.2e-14 84.0 164 36.0
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 1.2e-14 84.0 162 36.4
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 1.2e-14 84.0 162 36.4
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 1.2e-14 84.0 162 36.4
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 1.2e-14 84.0 167 50.9
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.2e-14 84.0 165 54.5
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 1.2e-14 84.0 128 59.4
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 1.2e-14 84.0 166 52.4
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 2.1e-14 83.2 167 52.1
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 2.7e-14 82.8 167 38.9
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 4.7e-14 82.0 123 39.0
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 6.1e-14 81.6 167 32.9
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 6.1e-14 81.6 167 52.7
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 6.1e-14 81.6 167 49.7
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 8.0e-14 81.3 88 47.7
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 8.0e-14 81.3 165 49.7
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 1.0e-13 80.9 165 44.8
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 1.0e-13 80.9 167 52.1
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 1.4e-13 80.5 178 46.6
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 1.4e-13 80.5 88 47.7
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 2.3e-13 79.7 167 50.9
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 2.3e-13 79.7 170 49.4
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 5.2e-13 78.6 161 50.9
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 6.7e-13 78.2 162 37.0
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 6.7e-13 78.2 162 49.4
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 8.8e-13 77.8 159 42.8
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 1.5e-12 77.0 169 47.3
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 2.6e-12 76.3 91 73.6
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 3.3e-12 75.9 148 53.4
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 7.5e-12 74.7 163 48.5
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 3.7e-11 72.4 89 73.0
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 4.8e-11 72.0 166 49.4
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 8.2e-11 71.2 147 36.1
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 2.4e-10 69.7 147 35.4
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 7.0e-10 68.2 125 38.4
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 1.2e-09 67.4 125 38.4
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.2e-09 67.4 122 38.5
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 1.6e-09 67.0 180 45.6
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 3.5e-09 65.9 170 47.6
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 4.5e-09 65.5 108 40.7
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 5.9e-09 65.1 125 39.2
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 7.7e-09 64.7 119 38.7
HanXRQChr05g0155191 Helianthus annuus HOM05D005335 ORTHO05D006472 1.3e-08 63.9 169 46.7
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 3.8e-08 62.4 106 40.6
ECA246G0037 Erigeron canadensis HOM05D005335 ORTHO05D006472 1.5e-07 60.5 174 44.8
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 3.2e-07 59.3 163 47.9
unitig_8.g4035 Utricularia gibba HOM05D005335 ORTHO05D006472 4.2e-07 58.9 126 51.6
Nitab4.5_0004454g0060 Nicotiana tabacum HOM05D000179 ORTHO05D000107 7.2e-07 58.2 158 44.3
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 1.2e-06 57.4 187 39.6
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 2.7e-06 56.2 123 32.5
CDE05G0391 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 4.7e-06 55.5 159 42.8
CDE11G1049 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 4.7e-06 55.5 159 44.0


User provided reference genes

Program Settings