Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 1.8e-208 729.2 420 100.0
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 6.0e-135 485.0 397 66.5
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 1.5e-130 470.3 397 65.5
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 7.1e-128 461.5 394 64.2
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 3.5e-127 459.1 397 63.0
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 1.8e-126 456.8 397 64.0
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 1.1e-125 454.1 400 63.0
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 1.3e-124 450.7 401 64.1
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 1.3e-124 450.7 400 63.0
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 2.1e-124 449.9 397 63.7
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 2.1e-124 449.9 393 64.1
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 3.7e-124 449.1 397 62.7
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.1e-123 446.0 397 62.5
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 1.2e-122 444.1 393 64.4
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 1.5e-122 443.7 397 63.2
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 3.4e-122 442.6 398 62.1
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 5.8e-122 441.8 389 64.0
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.3e-121 440.7 397 61.5
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 1.3e-121 440.7 397 61.5
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 2.2e-121 439.9 402 60.9
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 3.8e-121 439.1 397 62.7
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 1.4e-120 437.2 396 61.4
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 2.5e-120 436.4 397 61.7
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 5.5e-120 435.3 400 61.2
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 1.2e-119 434.1 391 61.1
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 1.6e-119 433.7 396 61.6
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.9e-118 429.1 389 62.5
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.9e-117 426.8 386 61.9
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.7e-117 425.2 389 61.7
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.3e-116 424.1 389 59.6
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 2.2e-116 423.3 387 60.7
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.8e-116 422.9 394 60.4
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 4.8e-116 422.2 388 60.8
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 1.1e-115 421.0 398 60.1
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 2.4e-115 419.9 412 58.5
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 6.9e-115 418.3 391 60.9
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 9.0e-115 417.9 398 59.8
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 1.2e-114 417.5 398 59.0
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 2.0e-114 416.8 388 60.8
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 2.6e-114 416.4 408 58.8
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 4.5e-114 415.6 408 59.1
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 4.5e-114 415.6 397 59.2
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 4.5e-114 415.6 397 60.2
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 7.6e-114 414.8 397 58.4
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 1.0e-113 414.5 408 58.6
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 1.3e-113 414.1 390 60.5
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 3.8e-113 412.5 390 62.1
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 5.0e-113 412.1 390 61.8
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 5.0e-113 412.1 384 59.6
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.4e-112 410.6 398 58.8
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 1.4e-112 410.6 397 57.9
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 7.2e-112 408.3 441 55.6
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 6.1e-111 405.2 400 57.8
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 1.3e-110 404.1 397 57.9
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 1.8e-110 403.7 388 58.5
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.9e-110 402.5 388 58.5
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 5.1e-110 402.1 410 57.8
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.5e-109 400.6 365 62.2
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.7e-109 398.7 391 58.3
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.2e-108 396.7 391 58.1
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 2.2e-108 396.7 392 57.4
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 3.7e-108 396.0 399 56.9
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 3.7e-108 396.0 407 56.5
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 8.2e-108 394.8 417 55.9
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 1.4e-107 394.0 329 67.2
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 4.1e-107 392.5 332 66.9
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 2.0e-106 390.2 395 58.2
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 3.4e-106 389.4 395 57.2
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 7.7e-106 388.3 383 57.7
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 7.7e-106 388.3 398 56.3
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 2.3e-102 376.7 327 63.9
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 2.3e-102 376.7 382 56.3
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 3.9e-102 375.9 397 55.4
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 3.9e-102 375.9 394 53.3
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 6.7e-102 375.2 393 54.7
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 9.7e-101 371.3 484 47.9
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 1.3e-100 370.9 395 54.2
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.8e-100 369.8 363 57.6
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 3.7e-100 369.4 369 59.3
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 3.7e-100 369.4 406 53.7
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.1e-99 367.9 370 58.9
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 8.5e-97 358.2 390 53.8
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 1.4e-96 357.5 391 53.5
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.4e-96 357.5 409 54.0
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.9e-96 357.1 386 55.4
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 1.2e-95 354.4 396 52.0
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 3.6e-95 352.8 362 57.7
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 1.1e-93 347.8 395 51.6
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.5e-93 347.4 488 45.7
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 4.4e-93 345.9 395 51.9
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 5.7e-93 345.5 396 52.0
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 2.8e-92 343.2 406 49.0
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 3.7e-92 342.8 396 50.8
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 3.1e-91 339.7 395 52.4
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 1.6e-90 337.4 395 49.6
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.3e-89 334.3 375 54.7
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 8.5e-89 331.6 396 48.2
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 1.5e-88 330.9 393 49.1
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 2.5e-88 330.1 396 48.2
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 7.2e-88 328.6 394 49.5
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.5e-85 320.9 395 48.1
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 9.7e-85 318.2 393 48.9
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.2e-84 317.0 396 48.0
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.5e-80 304.3 332 56.0
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 4.4e-77 292.7 341 53.4
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 4.4e-77 292.7 293 59.0
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 5.7e-77 292.4 411 46.2
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 2.8e-68 263.5 320 51.6
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 8.3e-68 261.9 358 46.9
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 1.7e-65 254.2 263 60.5
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.7e-65 254.2 322 49.1
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 2.3e-65 253.8 230 61.7
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 1.1e-64 251.5 315 48.3
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 1.0e-62 245.0 318 52.5
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 8.9e-62 241.9 337 48.4
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 3.4e-61 240.0 395 43.0
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 7.8e-58 228.8 420 37.6
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 3.7e-44 183.3 411 36.5
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 4.6e-42 176.4 209 49.8
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.6e-32 142.9 82 76.8
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 7.3e-32 142.5 152 53.3
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 7.3e-32 142.5 152 53.3
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 6.4e-28 129.4 355 31.8
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 3.5e-26 123.6 290 32.8
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 4.3e-24 116.7 98 73.5
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 2.4e-19 100.9 143 41.3
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.1e-18 97.8 73 78.1
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.8e-17 94.7 154 40.9
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.6e-15 88.2 183 38.8
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 5.3e-14 83.2 118 41.5
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.3e-12 78.6 65 66.2
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 1.7e-12 78.2 39 79.5
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.9e-11 74.7 93 48.4
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.2e-10 72.0 194 33.5
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 1.3e-07 62.0 82 47.6
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 2.8e-07 60.8 86 43.0
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.1e-06 57.4 42 76.2
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 9.0e-06 55.8 92 50.0


User provided reference genes

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