Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 0.0e+00 1082.0 544 100.0
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 2.8e-153 546.2 586 54.4
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 5.8e-146 521.9 547 55.4
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 8.9e-139 498.0 594 51.2
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 4.7e-132 475.7 576 50.0
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 5.2e-131 472.2 555 51.5
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 9.9e-130 468.0 523 52.6
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 2.4e-128 463.4 509 53.8
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 3.9e-126 456.1 562 51.1
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 9.6e-125 451.4 527 52.0
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 6.2e-124 448.7 556 49.5
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 1.1e-123 448.0 560 49.6
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 3.1e-123 446.4 580 49.5
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 4.0e-123 446.0 619 46.4
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 8.9e-123 444.9 619 46.4
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 8.9e-123 444.9 517 49.1
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 2.0e-122 443.7 598 47.5
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 2.0e-122 443.7 502 51.6
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 3.4e-122 443.0 591 47.2
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 6.4e-121 438.7 618 44.7
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 1.4e-120 437.6 510 51.6
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.9e-120 437.2 581 48.0
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 3.2e-120 436.4 577 47.5
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 5.4e-120 435.6 531 46.9
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 1.6e-119 434.1 564 48.0
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 1.6e-119 434.1 592 46.6
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 7.8e-119 431.8 558 46.1
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 3.0e-118 429.9 579 46.6
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 1.1e-117 427.9 567 48.7
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 2.5e-117 426.8 423 53.9
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 7.3e-117 425.2 552 48.7
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 1.6e-116 424.1 544 47.8
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 3.6e-116 422.9 593 45.5
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 4.8e-116 422.5 545 49.2
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 6.2e-116 422.2 487 52.6
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 1.1e-115 421.4 523 48.8
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 1.8e-115 420.6 529 48.4
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 3.1e-115 419.9 457 54.5
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 2.0e-114 417.2 545 47.5
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 7.6e-114 415.2 582 47.1
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 9.9e-114 414.8 547 45.9
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 1.3e-113 414.5 580 46.6
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 2.2e-113 413.7 592 47.0
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 8.4e-113 411.8 556 47.7
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 1.1e-112 411.4 555 46.3
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 3.2e-112 409.8 588 46.1
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 9.3e-112 408.3 511 48.9
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 1.2e-111 407.9 588 45.9
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 3.5e-111 406.4 569 46.7
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 4.6e-111 406.0 466 50.6
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 6.0e-111 405.6 533 46.2
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 1.0e-110 404.8 523 48.4
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 1.0e-110 404.8 534 45.3
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 1.7e-110 404.1 492 50.6
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 8.7e-110 401.7 588 45.6
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 2.5e-109 400.2 588 46.9
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 3.3e-109 399.8 534 47.6
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 4.3e-109 399.4 454 54.0
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 9.6e-109 398.3 515 48.5
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 1.6e-108 397.5 457 51.9
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.1e-108 397.1 582 46.7
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 2.1e-108 397.1 485 48.7
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 3.6e-108 396.4 616 45.0
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.8e-107 394.0 695 39.3
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 4.0e-107 392.9 515 48.5
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 6.9e-107 392.1 509 47.9
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 9.0e-107 391.7 422 52.8
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 1.5e-106 391.0 487 49.5
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 3.4e-106 389.8 541 47.3
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 5.8e-106 389.0 603 43.6
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.3e-105 387.9 507 48.5
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 1.7e-105 387.5 566 45.9
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 6.4e-105 385.6 521 47.0
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 3.2e-104 383.3 355 59.4
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 9.3e-104 381.7 574 45.3
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 6.7e-102 375.6 535 46.4
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 4.3e-101 372.9 427 49.6
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 1.6e-100 370.9 418 51.9
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 4.8e-100 369.4 613 41.6
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 5.3e-99 365.9 542 43.9
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 3.4e-98 363.2 524 45.2
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.5e-98 362.8 449 48.3
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 2.2e-97 360.5 407 52.1
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 4.9e-97 359.4 450 47.3
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 5.5e-96 355.9 366 55.2
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 4.6e-95 352.8 423 49.6
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.6e-95 352.8 438 47.9
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.5e-93 347.8 491 46.4
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 4.8e-92 342.8 473 46.3
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 3.1e-91 340.1 486 45.9
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 5.3e-91 339.3 562 44.0
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 6.9e-91 339.0 423 47.5
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 1.2e-90 338.2 477 46.8
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 1.2e-90 338.2 348 51.4
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 1.5e-90 337.8 418 50.5
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 1.5e-90 337.8 418 50.5
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 2.0e-90 337.4 343 53.1
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 3.4e-90 336.7 446 47.1
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.7e-89 334.3 389 50.1
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 2.2e-89 334.0 537 41.2
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 2.9e-89 333.6 396 50.3
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 5.0e-89 332.8 521 43.8
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 2.5e-88 330.5 387 48.6
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 3.2e-88 330.1 374 51.3
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 4.2e-88 329.7 537 43.6
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 5.5e-88 329.3 477 43.4
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 5.5e-88 329.3 418 49.5
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 1.6e-87 327.8 418 49.3
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 2.1e-87 327.4 418 49.3
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 7.9e-87 325.5 448 45.5
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 2.3e-86 323.9 541 41.0
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 8.7e-86 322.0 374 50.8
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 8.7e-86 322.0 374 50.8
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 8.7e-86 322.0 388 50.5
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 1.1e-85 321.6 328 54.6
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 7.4e-85 318.9 383 50.7
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 1.6e-84 317.8 466 44.0
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 3.1e-83 313.5 441 44.4
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 4.1e-83 313.2 467 43.5
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 9.0e-83 312.0 328 50.0
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 7.7e-82 308.9 386 47.7
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 1.1e-80 305.1 589 39.7
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.6e-79 299.7 426 42.3
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 4.5e-74 283.1 293 52.2
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.2e-72 276.6 398 43.5
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 4.7e-71 273.1 282 56.7
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.1e-69 268.5 353 46.2
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 3.7e-68 263.5 349 45.3
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 6.3e-68 262.7 285 52.3
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 6.3e-68 262.7 321 45.2
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 2.4e-67 260.8 272 50.7
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.5e-66 258.1 348 45.7
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 3.6e-63 246.9 233 56.7
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 4.4e-61 240.0 299 46.5
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.5e-53 214.9 270 47.4
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 2.8e-52 210.7 257 49.8
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 2.8e-52 210.7 290 43.4
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 3.8e-49 200.3 198 53.0
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 5.9e-42 176.4 235 51.9
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.1e-40 172.2 441 34.9
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 2.4e-35 154.5 400 33.2
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 7.5e-29 132.9 241 43.6
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 2.2e-28 131.3 202 39.1
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 3.7e-28 130.6 509 28.1
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 4.1e-27 127.1 218 38.5
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 3.5e-26 124.0 177 47.5
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 6.8e-22 109.8 420 29.8
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 3.2e-19 100.9 226 35.8
CSS0013506 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 2.8e-15 87.8 211 34.1
SEGI_27964 Sequoiadendron giganteum HOM05D002617 ORTHO05D006076 2.8e-07 61.2 50 58.0
CDE03G0290 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 8.1e-07 59.7 197 31.0


User provided reference genes

Program Settings