Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 6.5e-164 580.9 340 100.0
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.7e-63 247.3 358 46.6
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.7e-61 240.0 355 49.9
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.4e-57 226.9 331 52.0
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.2e-55 220.3 330 53.9
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 3.6e-45 186.4 332 43.1
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.3e-42 177.9 335 44.5
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.7e-42 177.6 318 39.6
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 4.8e-42 176.0 329 40.7
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 3.5e-40 169.9 332 38.9
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.8e-39 166.4 332 38.3
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.8e-39 166.4 338 41.4
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 5.0e-39 166.0 340 38.2
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 3.2e-38 163.3 325 40.9
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 3.2e-38 163.3 338 43.5
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.2e-37 161.4 356 36.0
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.6e-37 161.0 308 42.5
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.6e-37 159.8 310 42.9
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 4.7e-37 159.5 328 40.5
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.4e-36 157.9 325 34.2
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.8e-36 157.5 363 41.0
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 6.8e-36 155.6 316 35.4
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 6.8e-36 155.6 335 43.9
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 8.8e-36 155.2 313 41.2
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 3.4e-35 153.3 363 40.2
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 5.7e-35 152.5 313 41.2
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.3e-34 151.4 363 40.2
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.3e-34 151.4 340 39.1
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.2e-34 150.6 363 35.8
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 2.2e-34 150.6 336 42.6
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 3.7e-34 149.8 331 33.2
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 6.3e-34 149.1 365 39.5
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 6.3e-34 149.1 325 33.2
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 8.3e-34 148.7 191 46.1
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 1.4e-33 147.9 182 45.6
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.4e-33 147.9 325 39.7
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.8e-33 147.5 325 39.7
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 3.1e-33 146.7 326 44.8
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 3.1e-33 146.7 363 39.1
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 5.4e-33 146.0 335 36.7
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 2.0e-32 144.1 341 41.6
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 4.5e-32 142.9 344 38.7
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 1.3e-31 141.4 322 33.9
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 9.5e-30 135.2 287 37.6
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.6e-29 134.4 326 32.2
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 2.8e-29 133.7 351 43.6
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 8.0e-29 132.1 339 36.3
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.3e-28 130.6 338 33.4
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 8.9e-28 128.6 266 41.4
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.2e-27 128.3 325 30.5
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.5e-27 127.9 334 36.8
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 2.0e-27 127.5 345 39.1
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.6e-27 127.1 324 36.4
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 9.8e-27 125.2 350 37.1
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.3e-26 124.8 196 42.9
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 3.7e-26 123.2 358 33.5
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.1e-25 121.7 335 32.8
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 1.8e-25 120.9 322 40.7
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.8e-25 120.9 327 32.1
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 3.2e-25 120.2 321 39.9
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 3.2e-25 120.2 308 33.1
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 2.0e-24 117.5 352 34.7
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 3.9e-23 113.2 202 38.6
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.1e-22 111.7 315 35.2
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 1.1e-22 111.7 334 29.0
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 1.1e-22 111.7 337 32.0
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 1.5e-22 111.3 355 29.0
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 4.3e-22 109.8 332 29.2
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 7.3e-22 109.0 329 35.3
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 7.3e-22 109.0 338 28.1
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.6e-21 106.7 329 29.5
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 1.0e-20 105.1 355 34.9
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.0e-20 105.1 334 39.5
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.4e-20 104.8 332 28.3
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 5.2e-20 102.8 333 28.8
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 2.6e-19 100.5 334 35.9
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 4.4e-19 99.8 305 29.8
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 5.8e-19 99.4 325 27.4
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 5.8e-19 99.4 272 40.4
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 7.5e-19 99.0 336 37.5
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.5e-19 99.0 325 27.1
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 9.8e-19 98.6 327 30.0
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 2.2e-18 97.4 321 28.7
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 2.9e-18 97.1 333 30.9
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 6.4e-18 95.9 301 38.2
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.1e-17 95.1 317 31.2
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.9e-17 94.4 328 35.7
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 9.2e-17 92.0 283 29.7
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.2e-16 91.7 320 38.4
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.2e-16 91.7 311 28.3
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.2e-16 91.7 326 35.6
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 1.2e-16 91.7 304 29.6
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.6e-16 91.3 336 35.1
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.0e-15 88.6 201 33.8
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.3e-15 87.4 275 31.6
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 3.9e-15 86.7 320 31.9
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 6.6e-15 85.9 332 33.7
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.5e-14 84.7 244 35.2
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 3.3e-14 83.6 268 30.6
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 3.3e-14 83.6 333 30.3
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 4.3e-14 83.2 329 29.5
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 4.3e-14 83.2 325 36.0
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 4.3e-14 83.2 326 35.9
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.2e-13 81.6 174 35.1
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.1e-13 80.9 276 29.0
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.6e-13 80.1 307 27.4
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 8.1e-13 79.0 321 28.7
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.8e-12 77.8 327 34.6
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.8e-12 77.8 296 31.4
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 2.3e-12 77.4 328 35.7
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 2.3e-12 77.4 191 31.4
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 3.1e-12 77.0 158 34.8
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 5.2e-12 76.3 197 31.0
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 5.2e-12 76.3 194 30.9
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 6.8e-12 75.9 328 35.7
ATR1125G023 Amborella trichopoda HOM05D004679 ORTHO05D005524 8.9e-12 75.5 177 34.5
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 8.9e-12 75.5 313 26.8
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-11 75.1 326 32.8
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-11 75.1 326 32.8
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 1.2e-11 75.1 328 35.7
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.2e-11 75.1 326 33.7
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.2e-11 75.1 326 33.7
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 3.4e-11 73.6 306 35.0
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 3.4e-11 73.6 329 27.7
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 5.8e-11 72.8 327 34.3
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 7.5e-11 72.4 325 33.5
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 7.5e-11 72.4 185 31.4
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 3.7e-10 70.1 147 32.7
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 1.4e-09 68.2 135 37.8
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.9e-09 67.8 159 34.0
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 5.4e-09 66.2 283 26.5
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.7e-08 63.9 318 33.3
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.3e-07 60.8 335 30.7
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 2.3e-07 60.8 299 22.7
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 8.6e-07 58.9 312 31.1
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 5.6e-06 56.2 210 36.7


User provided reference genes

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