Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 0.0e+00 1110.9 536 100.0
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 1.8e-224 782.7 520 69.8
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 2.1e-209 732.6 521 65.8
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 1.0e-208 730.3 526 66.3
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 1.2e-207 726.9 526 66.5
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 6.4e-206 721.1 519 66.1
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 1.2e-204 716.8 523 65.2
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 2.0e-204 716.1 521 64.1
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.9e-202 709.5 536 63.8
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 7.3e-202 707.6 537 63.1
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 4.7e-201 704.9 517 65.6
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.0e-199 699.5 520 62.7
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.8e-199 698.0 520 62.7
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 4.9e-198 694.9 525 62.3
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 1.9e-197 693.0 471 67.9
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 7.8e-196 687.6 470 68.7
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.3e-195 686.8 564 60.1
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 1.7e-195 686.4 521 63.0
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 4.3e-194 681.8 468 67.7
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 1.6e-193 679.9 521 62.2
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 2.8e-193 679.1 517 62.1
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 3.6e-193 678.7 525 62.7
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 2.2e-190 669.5 461 67.0
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 1.9e-189 666.4 529 61.2
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 1.9e-189 666.4 522 61.9
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 7.1e-189 664.5 515 61.0
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 6.0e-188 661.4 520 60.2
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 1.0e-187 660.6 516 61.4
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 3.9e-187 658.7 469 65.7
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 8.6e-187 657.5 520 61.3
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 8.6e-187 657.5 423 71.4
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 2.5e-186 656.0 522 60.3
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 5.6e-186 654.8 520 59.8
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 9.6e-186 654.1 498 63.1
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 2.8e-185 652.5 472 64.4
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 8.1e-185 651.0 484 64.7
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 1.1e-184 650.6 469 65.0
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.4e-184 650.2 582 58.6
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 3.1e-184 649.0 504 62.7
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 8.9e-184 647.5 511 62.0
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 1.2e-183 647.1 522 58.6
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 2.6e-183 646.0 474 65.0
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 2.6e-183 646.0 471 64.1
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 3.4e-183 645.6 519 60.7
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 5.8e-183 644.8 468 64.7
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 2.2e-182 642.9 515 61.2
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 2.9e-182 642.5 582 57.2
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 3.8e-182 642.1 474 63.7
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 3.8e-182 642.1 471 63.9
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 4.9e-182 641.7 515 61.0
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 8.4e-182 641.0 465 65.2
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 1.1e-181 640.6 524 59.9
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 1.9e-181 639.8 471 63.9
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 7.8e-180 634.4 462 64.1
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 1.0e-179 634.0 474 63.5
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 2.3e-179 632.9 474 62.0
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 3.3e-178 629.0 468 64.3
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 5.6e-178 628.2 468 64.5
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 9.6e-178 627.5 471 64.1
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 2.1e-177 626.3 592 54.4
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 6.2e-177 624.8 517 59.6
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 4.0e-176 622.1 464 65.1
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 5.3e-176 621.7 462 63.9
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 9.9e-175 617.5 467 63.0
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 6.4e-174 614.8 464 62.7
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.2e-173 612.1 515 59.8
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.5e-172 609.0 467 64.0
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 7.9e-172 607.8 631 51.3
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.9e-170 603.2 518 57.9
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 1.3e-169 600.5 517 57.8
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 4.8e-169 598.6 526 56.7
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 4.0e-168 595.5 489 60.1
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 4.0e-168 595.5 489 60.1
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 5.8e-167 591.7 467 61.5
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 4.9e-166 588.6 513 54.8
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 1.2e-164 583.9 521 56.8
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 2.7e-164 582.8 473 59.8
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 1.0e-163 580.9 532 53.4
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 6.7e-163 578.2 519 55.9
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 1.1e-162 577.4 518 55.6
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 1.1e-160 570.9 517 54.9
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 4.0e-160 568.9 471 58.6
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 1.2e-159 567.4 555 53.3
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 5.8e-159 565.1 526 54.0
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 1.0e-158 564.3 517 54.7
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 1.0e-158 564.3 518 54.6
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 1.0e-158 564.3 517 54.7
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 4.9e-158 562.0 528 52.7
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 6.7e-155 551.6 523 52.6
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 4.5e-151 538.9 509 54.0
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 7.4e-146 521.5 378 65.1
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 4.2e-141 505.8 429 57.1
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 1.5e-138 497.3 517 50.9
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 5.3e-128 462.2 325 66.5
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 2.1e-124 450.3 359 61.6
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 9.4e-117 424.9 547 40.8
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 3.2e-109 399.8 301 63.8
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 4.0e-107 392.9 293 62.8
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 5.2e-107 392.5 352 55.7
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 4.1e-104 382.9 493 41.4
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 3.3e-101 373.2 515 41.6
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 1.8e-99 367.5 498 38.8
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 7.8e-87 325.5 277 58.1
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 5.0e-86 322.8 277 57.8
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 1.2e-84 318.2 298 49.3
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 6.8e-83 312.4 219 63.0
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 4.4e-82 309.7 266 57.9
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 2.8e-76 290.4 317 49.2
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 2.4e-67 260.8 283 50.2
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 9.9e-58 228.8 213 51.6
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 1.3e-57 228.4 346 38.2
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 6.7e-46 189.5 348 36.8
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 1.2e-39 168.7 189 46.0
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 3.2e-32 144.1 85 75.3
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 5.3e-27 126.7 76 73.7
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 9.4e-24 115.9 103 53.4
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.8e-19 101.7 94 48.9
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.0e-18 98.2 75 61.3
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 4.5e-18 97.1 131 38.2
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.1e-16 92.4 53 79.2
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.9e-16 91.7 100 47.0
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.5e-16 90.1 53 79.2
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.6e-15 88.6 112 40.2
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.6e-15 87.4 53 79.2
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 8.0e-15 86.3 53 73.6
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 8.0e-15 86.3 53 73.6
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 5.7e-13 80.1 39 89.7
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 3.5e-10 70.9 70 52.9
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 5.5e-08 63.5 162 32.7
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.0e-06 59.3 53 56.6
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 4.0e-06 57.4 58 53.4


User provided reference genes

Program Settings