Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00200 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 6.4e-79 297.4 152 100.0
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 6.5e-55 217.6 150 78.0
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 1.4e-54 216.5 144 78.5
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 2.5e-54 215.7 152 77.0
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 3.2e-54 215.3 138 78.3
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 4.2e-54 214.9 147 79.6
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 4.2e-54 214.9 151 77.5
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 5.5e-54 214.5 149 77.2
QL02p050347 Quercus lobata HOM05D003588 ORTHO05D004252 7.2e-54 214.2 149 76.5
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 7.2e-54 214.2 149 76.5
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 2.7e-53 212.2 148 73.6
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 2.7e-53 212.2 144 75.7
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 3.6e-53 211.8 144 78.5
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 6.1e-53 211.1 148 75.7
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 6.1e-53 211.1 148 75.0
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 6.1e-53 211.1 149 77.2
GSVIVG01030980001 Vitis vinifera HOM05D003588 ORTHO05D004252 7.9e-53 210.7 144 76.4
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 2.3e-52 209.1 144 76.4
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.3e-52 209.1 148 75.0
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 2.3e-52 209.1 148 73.6
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 3.0e-52 208.8 139 79.9
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 3.0e-52 208.8 139 79.9
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 3.0e-52 208.8 143 76.2
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 3.0e-52 208.8 148 75.0
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 3.0e-52 208.8 148 75.0
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 3.0e-52 208.8 148 75.0
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 3.0e-52 208.8 148 72.3
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 3.9e-52 208.4 144 74.3
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 6.7e-52 207.6 148 73.6
MBI16_g38075_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 8.8e-52 207.2 153 69.9
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 8.8e-52 207.2 148 73.6
RcHm_v2.0_Chr3g0494131 Rosa chinensis HOM05D003588 ORTHO05D004252 8.8e-52 207.2 148 74.3
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 1.1e-51 206.8 152 74.3
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 1.5e-51 206.5 144 74.3
Cfa007893 Carpinus fangiana HOM05D003588 ORTHO05D004252 2.0e-51 206.1 138 76.1
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 2.0e-51 206.1 141 77.3
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 2.6e-51 205.7 144 74.3
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 2.6e-51 205.7 148 75.7
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 2.6e-51 205.7 148 72.3
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 4.4e-51 204.9 150 74.0
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 7.4e-51 204.1 145 73.1
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 7.4e-51 204.1 145 73.1
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 1.3e-50 203.4 145 74.5
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 3.7e-50 201.8 144 73.6
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 4.8e-50 201.4 150 71.3
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 6.3e-50 201.1 147 72.8
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 1.1e-49 200.3 148 71.6
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 1.1e-49 200.3 144 71.5
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 1.4e-49 199.9 149 71.1
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 2.4e-49 199.1 147 73.5
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 2.4e-49 199.1 143 72.7
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 3.1e-49 198.7 144 72.9
MSTRG.2778 Avicennia marina HOM05D003588 ORTHO05D004252 5.3e-49 198.0 141 73.8
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 9.1e-49 197.2 148 72.3
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 9.1e-49 197.2 143 73.4
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 1.2e-48 196.8 146 72.6
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 1.2e-48 196.8 145 72.4
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 2.6e-48 195.7 139 74.8
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 2.6e-48 195.7 145 73.1
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 2.6e-48 195.7 147 70.7
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 7.7e-48 194.1 151 70.9
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 1.3e-47 193.4 148 71.6
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 1.7e-47 193.0 163 64.4
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 1.7e-47 193.0 148 68.2
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 3.8e-47 191.8 145 71.0
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 6.5e-47 191.0 145 71.0
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 1.9e-46 189.5 150 70.0
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 3.2e-46 188.7 148 68.2
ATR0681G242 Amborella trichopoda HOM05D003588 ORTHO05D004252 4.2e-46 188.3 165 64.2
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 4.2e-46 188.3 150 70.0
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 5.5e-46 188.0 144 71.5
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 7.2e-46 187.6 149 69.8
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 7.2e-46 187.6 153 67.3
Lsat_1_v5_gn_4_155620 Lactuca sativa HOM05D003588 ORTHO05D004252 7.2e-46 187.6 153 66.0
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 9.4e-46 187.2 146 72.6
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 1.2e-45 186.8 151 65.6
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 2.7e-45 185.7 151 68.2
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 3.6e-45 185.3 152 69.1
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 3.6e-45 185.3 145 71.0
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 7.9e-45 184.1 153 67.3
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 1.4e-44 183.3 153 64.7
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 1.4e-44 183.3 153 64.7
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 1.4e-44 183.3 153 64.7
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 1.4e-44 183.3 153 64.7
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 1.4e-44 183.3 153 64.7
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 1.4e-44 183.3 145 69.7
HanXRQChr09g0262701 Helianthus annuus HOM05D003588 ORTHO05D004252 1.8e-44 183.0 156 64.1
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 2.3e-44 182.6 146 71.2
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 2.3e-44 182.6 146 71.2
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 3.0e-44 182.2 152 65.8
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 2.0e-43 179.5 142 66.9
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 3.3e-43 178.7 149 65.8
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 3.3e-43 178.7 144 66.0
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 1.3e-42 176.8 153 64.7
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 1.3e-42 176.8 153 64.7
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 1.3e-42 176.8 153 64.7
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.7e-42 176.4 130 74.6
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 2.2e-42 176.0 146 67.1
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 1.8e-41 172.9 146 66.4
AUR62009038 Chenopodium quinoa HOM05D003588 ORTHO05D004252 7.0e-41 171.0 130 69.2
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 9.1e-41 170.6 147 63.9
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 9.1e-41 170.6 147 63.9
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 9.1e-41 170.6 147 63.9
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 1.2e-40 170.2 139 65.5
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 2.0e-40 169.5 143 65.7
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 3.5e-40 168.7 117 77.8
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 2.2e-39 166.0 142 61.3
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 7.2e-38 161.0 150 62.7
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 9.4e-38 160.6 149 60.4
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 3.6e-37 158.7 141 61.7
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 8.0e-37 157.5 145 60.7
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 8.8e-36 154.1 166 59.0
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 7.7e-32 141.0 152 54.6
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 1.7e-31 139.8 145 55.2
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 8.5e-31 137.5 145 54.5
Dinv34795 Davidia involucrata HOM05D003588 ORTHO05D004252 5.5e-30 134.8 82 85.4
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 1.2e-29 133.7 139 54.0
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 2.1e-29 132.9 81 82.7
CDE02G3249 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 6.8e-28 127.9 121 56.2
SEGI_01406 Sequoiadendron giganteum HOM05D003588 ORTHO05D004252 8.8e-28 127.5 130 56.2
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 2.0e-27 126.3 145 53.8
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 5.7e-27 124.8 90 71.1
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 1.3e-26 123.6 146 52.1
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 1.3e-26 123.6 146 52.1
Solyc02g086320.1 Solanum lycopersicum HOM05D003588 ORTHO05D004252 1.0e-23 114.0 96 66.7
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.9e-22 109.8 135 48.9
CDE02G1293 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 4.2e-22 108.6 102 58.8
BcaC03g18478 Brassica carinata HOM05D003588 ORTHO05D004252 2.8e-18 95.9 97 56.7
Glyma.19G002000 Glycine max HOM05D003588 ORTHO05D004252 9.2e-17 90.9 96 55.2
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 9.5e-14 80.9 130 40.0
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 1.7e-10 70.1 94 37.2
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 2.3e-07 59.7 39 74.4


User provided reference genes

Program Settings