Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 6.7e-151 537.3 274 100.0
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.1e-132 476.9 274 90.1
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 9.9e-54 214.5 286 44.8
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.1e-52 211.1 286 46.9
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 1.7e-50 203.8 263 44.9
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 2.5e-49 199.9 278 45.3
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 7.3e-49 198.4 268 44.0
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 2.0e-46 190.3 277 41.5
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 2.0e-46 190.3 290 42.4
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 9.9e-46 188.0 266 44.0
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 4.9e-45 185.7 260 45.0
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.1e-44 184.5 249 44.6
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.4e-44 183.3 260 44.6
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 4.2e-44 182.6 260 44.6
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.3e-44 181.4 263 43.0
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.1e-43 180.3 276 40.9
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 1.3e-42 177.6 265 43.4
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 1.5e-41 174.1 274 39.1
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 5.6e-41 172.2 275 41.8
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.3e-40 171.0 258 43.0
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 6.2e-40 168.7 264 40.9
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 1.1e-39 167.9 258 39.9
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 1.5e-38 164.1 262 40.8
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.5e-38 164.1 276 40.9
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 4.5e-38 162.5 273 38.5
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 7.6e-38 161.8 278 40.3
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 1.3e-37 161.0 266 39.1
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.1e-36 157.9 262 39.3
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 5.5e-36 155.6 288 37.5
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 9.3e-36 154.8 288 36.8
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 2.1e-35 153.7 290 36.9
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 4.6e-35 152.5 269 40.1
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 7.9e-35 151.8 288 36.1
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.0e-34 151.4 273 37.0
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 1.3e-34 151.0 277 37.5
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 1.8e-34 150.6 275 38.9
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 1.8e-34 150.6 266 38.0
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.3e-34 150.2 288 36.8
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.3e-34 150.2 282 35.5
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 2.3e-34 150.2 320 35.9
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.0e-34 149.8 281 37.0
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 5.1e-34 149.1 318 34.0
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.1e-33 147.9 317 34.1
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.1e-33 147.9 271 35.4
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 1.5e-33 147.5 249 36.9
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.5e-33 147.5 315 33.3
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 4.3e-33 146.0 256 38.7
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 4.3e-33 146.0 256 39.1
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 5.6e-33 145.6 313 35.1
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 7.4e-33 145.2 271 37.3
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 7.4e-33 145.2 259 38.6
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.3e-32 144.4 273 37.7
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.6e-32 144.1 279 37.3
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 2.8e-32 143.3 264 36.4
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 2.8e-32 143.3 269 36.4
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 4.8e-32 142.5 274 35.8
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 4.8e-32 142.5 264 36.4
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 6.2e-32 142.1 267 36.7
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 6.2e-32 142.1 324 32.4
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 8.2e-32 141.7 274 35.0
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 8.2e-32 141.7 309 30.4
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 1.1e-31 141.4 264 36.7
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.1e-31 141.4 273 36.6
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.4e-31 141.0 349 31.2
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.8e-31 140.6 314 35.0
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.8e-31 140.6 305 34.4
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.8e-31 140.6 266 35.7
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 4.0e-31 139.4 305 34.8
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 6.9e-31 138.7 182 42.9
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 9.0e-31 138.3 284 35.9
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.2e-30 137.9 340 30.3
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.5e-30 137.5 265 35.1
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 2.0e-30 137.1 305 35.1
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 2.0e-30 137.1 276 34.8
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.0e-30 137.1 269 35.7
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 3.4e-30 136.3 266 36.1
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 3.4e-30 136.3 349 30.4
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 4.5e-30 136.0 282 36.5
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.3e-29 134.4 275 34.5
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.3e-29 134.4 300 33.3
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.7e-29 134.0 294 31.0
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.8e-29 132.9 269 34.6
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 6.5e-29 132.1 191 40.8
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 6.5e-29 132.1 247 36.0
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 8.4e-29 131.7 375 31.2
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 8.4e-29 131.7 163 47.9
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-28 131.3 286 32.5
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.4e-28 131.0 343 28.9
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 1.9e-28 130.6 277 33.9
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.5e-28 130.2 272 34.6
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 5.5e-28 129.0 268 35.1
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 9.3e-28 128.3 271 33.6
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 1.2e-27 127.9 355 29.3
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.6e-27 127.5 124 50.8
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 1.6e-27 127.5 277 36.1
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 2.7e-27 126.7 281 34.5
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 3.5e-27 126.3 314 30.6
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 4.6e-27 125.9 276 35.1
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.6e-27 125.9 152 45.4
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.8e-26 124.0 267 34.8
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.8e-26 124.0 176 43.2
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 2.3e-26 123.6 272 33.5
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 3.0e-26 123.2 238 36.1
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.0e-26 123.2 151 44.4
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 3.9e-26 122.9 283 33.6
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 3.9e-26 122.9 283 33.6
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 3.9e-26 122.9 364 28.3
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 5.1e-26 122.5 243 35.4
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 6.7e-26 122.1 255 34.9
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.5e-25 120.9 279 31.9
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.9e-25 120.6 262 34.0
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.5e-25 120.2 120 51.7
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.5e-25 120.2 120 51.7
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 3.3e-25 119.8 150 42.7
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 7.4e-25 118.6 220 36.8
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.3e-24 117.9 315 29.5
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.6e-24 117.5 220 37.7
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 2.8e-24 116.7 239 35.6
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 2.8e-24 116.7 123 50.4
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 2.8e-24 116.7 275 32.4
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 2.8e-24 116.7 275 32.4
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 3.7e-24 116.3 275 32.7
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 8.2e-24 115.2 252 32.9
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.8e-23 114.0 270 33.7
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 3.1e-23 113.2 242 35.1
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 3.1e-23 113.2 130 46.2
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 4.1e-23 112.8 237 32.1
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 9.0e-23 111.7 234 34.6
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 1.2e-22 111.3 193 37.3
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 3.4e-22 109.8 137 37.2
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 7.6e-22 108.6 243 34.6
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.0e-21 108.2 243 34.6
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 2.2e-21 107.1 216 36.6
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 6.5e-21 105.5 120 45.8
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 5.5e-20 102.4 308 31.2
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 9.3e-20 101.7 101 46.5
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 3.6e-19 99.8 125 46.4
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 4.6e-19 99.4 259 32.4
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 6.1e-19 99.0 242 31.0
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 1.8e-18 97.4 226 30.5
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 3.0e-18 96.7 272 30.1
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 5.1e-18 95.9 276 31.2
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 5.1e-18 95.9 183 35.5
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 1.5e-17 94.4 256 31.2
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.9e-17 94.0 122 43.4
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.9e-17 94.0 331 27.5
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.3e-17 92.8 269 29.0
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.3e-16 89.0 91 48.4
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.5e-14 84.3 97 41.2
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 7.2e-12 75.5 238 28.2
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.2e-11 74.7 191 31.4
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 1.8e-10 70.9 82 45.1
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 5.3e-07 59.3 112 34.8
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 2.6e-06 57.0 229 25.8


User provided reference genes

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