Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 4.1e-167 591.3 292 100.0
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.7e-107 393.3 251 77.3
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.4e-106 390.2 249 78.7
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.8e-106 389.8 248 78.6
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 9.1e-106 387.5 247 76.1
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 2.0e-105 386.3 249 77.5
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.6e-105 386.0 248 75.0
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 3.5e-105 385.6 250 77.2
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 5.9e-105 384.8 250 73.6
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 5.9e-105 384.8 250 76.4
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 7.7e-105 384.4 250 73.6
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 7.7e-105 384.4 250 76.8
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.0e-104 384.0 247 75.7
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 1.3e-104 383.6 250 77.6
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.1e-103 380.6 250 76.0
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 1.1e-103 380.6 247 75.7
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.9e-103 379.8 252 74.6
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.9e-103 379.8 250 75.6
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 2.5e-103 379.4 254 74.0
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 9.4e-103 377.5 248 74.6
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 2.1e-102 376.3 250 75.6
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 2.7e-102 375.9 257 73.5
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.7e-102 375.2 249 75.9
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 4.7e-102 375.2 250 74.8
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 6.1e-102 374.8 249 75.9
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.0e-101 374.0 239 77.0
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.0e-101 374.0 239 77.0
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 1.0e-101 374.0 249 74.7
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 1.4e-101 373.6 251 73.3
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 2.3e-101 372.9 248 76.2
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 3.0e-101 372.5 251 76.1
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 5.2e-101 371.7 250 73.6
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 5.2e-101 371.7 239 76.6
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 5.2e-101 371.7 245 74.3
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 5.2e-101 371.7 252 72.2
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 8.8e-101 370.9 252 71.8
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 8.8e-101 370.9 248 73.0
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 1.1e-100 370.5 250 72.8
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.5e-100 370.2 254 73.6
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 2.0e-100 369.8 249 73.5
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.0e-100 369.8 252 73.0
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 5.7e-100 368.2 250 72.8
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 7.5e-100 367.9 245 73.9
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 9.7e-100 367.5 250 71.2
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.7e-99 366.7 251 73.7
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 2.2e-99 366.3 249 75.1
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 2.8e-99 365.9 250 71.6
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.8e-99 365.2 248 74.6
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 6.3e-99 364.8 248 74.6
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 6.3e-99 364.8 250 71.2
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 6.3e-99 364.8 250 70.8
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 8.2e-99 364.4 242 72.7
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 8.2e-99 364.4 250 72.8
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.1e-98 364.0 239 73.2
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 1.1e-98 364.0 248 75.0
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.1e-98 364.0 248 75.0
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 1.1e-98 364.0 245 73.5
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.1e-98 364.0 242 74.4
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.1e-98 364.0 248 71.8
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.4e-98 363.6 246 72.8
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 2.4e-98 362.8 250 70.4
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.4e-98 362.8 249 71.1
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 2.4e-98 362.8 248 71.0
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.1e-98 362.5 248 74.2
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 3.1e-98 362.5 248 71.4
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.3e-98 361.7 242 72.7
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 7.0e-98 361.3 251 70.1
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 7.0e-98 361.3 249 71.9
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 9.1e-98 360.9 246 72.0
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 9.1e-98 360.9 246 72.0
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.6e-97 360.1 241 74.3
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.6e-97 360.1 246 71.5
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 2.0e-97 359.8 246 71.5
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 4.5e-97 358.6 260 68.5
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 4.5e-97 358.6 249 71.1
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 4.5e-97 358.6 246 71.5
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 5.9e-97 358.2 246 71.1
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 5.9e-97 358.2 242 72.3
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 7.7e-97 357.8 246 71.5
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.0e-96 357.5 246 71.1
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 1.0e-96 357.5 252 70.6
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.0e-96 355.1 246 70.3
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 5.0e-96 355.1 250 69.2
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 6.5e-96 354.8 246 69.1
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 8.5e-96 354.4 250 70.0
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.5e-95 352.8 250 69.6
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 3.2e-95 352.4 252 70.6
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 4.2e-95 352.1 247 69.6
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 4.2e-95 352.1 249 70.3
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 4.2e-95 352.1 248 68.5
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 5.5e-95 351.7 242 71.5
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 7.2e-95 351.3 256 67.6
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 9.4e-95 350.9 236 69.9
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 1.6e-94 350.1 256 67.6
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.6e-94 350.1 242 69.0
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 2.7e-94 349.4 246 70.3
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 8.0e-94 347.8 244 68.9
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 1.0e-93 347.4 241 71.4
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.0e-93 347.4 248 69.4
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 1.0e-93 347.4 241 71.4
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 1.4e-93 347.1 256 67.2
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.0e-93 345.9 242 68.6
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 4.0e-93 345.5 272 65.1
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 4.0e-93 345.5 272 65.1
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.0e-92 343.2 294 60.9
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 2.6e-92 342.8 259 64.9
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 3.4e-92 342.4 224 76.3
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 5.7e-92 341.7 246 67.9
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 2.8e-91 339.3 250 67.6
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.1e-90 337.4 256 68.0
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 4.1e-90 335.5 253 67.6
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 7.0e-90 334.7 240 69.6
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 2.0e-89 333.2 247 65.6
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.7e-89 332.8 237 68.4
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.5e-89 332.0 237 68.4
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 1.0e-88 330.9 241 68.0
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 2.9e-88 329.3 200 78.0
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 2.5e-87 326.2 183 86.3
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 3.2e-87 325.9 245 67.3
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 3.6e-86 322.4 288 59.0
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 3.6e-86 322.4 243 66.3
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 6.1e-86 321.6 201 77.1
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.3e-85 319.7 248 66.1
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 4.0e-85 318.9 246 64.6
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 8.6e-80 301.2 174 81.6
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.2e-78 297.4 250 62.8
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.3e-77 293.1 244 64.3
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 4.4e-76 288.9 175 77.7
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 1.0e-72 277.7 251 59.4
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.7e-72 276.9 239 63.6
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 3.4e-68 262.7 153 80.4
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 2.2e-67 260.0 147 85.7
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 2.2e-67 260.0 147 85.7
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 1.2e-65 254.2 192 59.4
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.6e-65 253.8 175 73.1
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.7e-64 250.4 186 69.4
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 8.6e-56 221.5 182 57.1
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 1.3e-51 207.6 175 60.0
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 6.0e-49 198.7 183 56.8
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 3.6e-46 189.5 189 55.6
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 3.6e-46 189.5 189 55.6
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 4.9e-43 179.1 110 77.3
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.2e-41 174.5 173 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.9e-39 167.2 161 51.6
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 8.4e-35 151.8 88 80.7
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 2.0e-28 130.6 73 86.3
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 9.3e-26 121.7 66 83.3
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 9.3e-26 121.7 73 78.1
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 3.9e-24 116.3 174 38.5
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 1.6e-22 110.9 75 74.7
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 2.4e-21 107.1 108 57.4
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 3.1e-21 106.7 168 35.7
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-20 104.8 99 55.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.2e-20 104.8 99 55.6
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 3.7e-14 83.2 94 53.2
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 6.3e-14 82.4 83 57.8
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 8.5e-11 72.0 236 28.8
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 1.4e-10 71.2 52 63.5
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.6e-09 67.8 184 28.8
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 1.0e-08 65.1 54 63.0
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.9e-07 60.8 38 73.7
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 3.3e-07 60.1 65 49.2
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 4.3e-07 59.7 46 58.7
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 9.7e-07 58.5 220 26.4


User provided reference genes

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