Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 3192.1 1615 100.0
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2466.0 1617 77.6
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2443.7 1618 75.8
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2442.2 1618 75.2
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2441.0 1618 75.0
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2393.2 1615 74.1
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2370.1 1615 73.8
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2366.7 1609 73.3
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2363.2 1615 73.7
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2358.6 1623 73.1
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2355.9 1619 73.6
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2355.5 1620 73.1
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2352.8 1612 73.4
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2352.4 1613 73.4
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2335.1 1601 73.4
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2325.4 1615 72.4
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2324.7 1614 72.6
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2316.6 1612 72.0
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2314.7 1614 72.2
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2306.9 1626 72.2
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2305.8 1615 72.3
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2305.4 1625 71.4
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2303.1 1623 71.5
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2300.8 1622 71.6
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2294.2 1612 71.3
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2280.4 1614 71.3
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2280.4 1617 71.1
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2280.0 1624 71.2
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2269.6 1621 70.7
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2261.1 1650 70.6
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2252.2 1622 70.0
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2250.7 1532 74.5
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2249.6 1626 70.0
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2243.8 1612 69.8
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2241.5 1622 70.3
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2234.9 1620 69.8
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2234.9 1644 68.9
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2231.8 1587 71.2
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2227.6 1601 70.3
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2224.5 1518 74.1
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2219.1 1613 69.7
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2203.7 1648 68.4
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2201.8 1619 69.4
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2200.2 1633 68.7
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2200.2 1608 68.7
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2194.1 1614 68.6
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2194.1 1614 68.9
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2191.4 1599 70.1
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2182.9 1627 68.6
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2182.5 1931 60.6
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2181.8 1669 66.7
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2179.4 1619 68.1
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2171.0 1621 68.6
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2145.2 1622 67.1
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2139.4 1628 67.4
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2135.9 1613 68.3
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2134.4 1626 67.8
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2133.6 1603 67.9
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2133.2 1623 67.2
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2130.1 1647 67.2
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2125.5 1596 67.9
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2124.7 1617 67.0
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2124.0 1515 71.2
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2123.2 1616 67.1
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2123.2 1451 72.9
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2122.1 1626 67.2
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2118.2 1622 66.3
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2110.5 1624 66.7
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2109.3 1625 66.9
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2097.0 1593 66.9
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2085.1 1610 65.8
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2079.3 1608 65.8
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2064.3 1420 72.2
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2058.5 1616 65.3
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2058.5 1610 65.8
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2055.0 1611 65.1
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2054.6 1610 65.2
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2052.7 1616 65.4
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2052.3 1616 65.0
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2051.2 1614 65.3
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2050.8 1615 64.7
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2035.8 1557 66.7
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2020.7 1610 64.5
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2019.2 1612 64.5
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1995.3 1963 55.6
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1994.2 1416 71.5
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1986.5 1375 73.0
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1983.8 1495 68.2
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1909.8 1628 61.2
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1875.1 1620 60.9
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1827.4 1202 75.4
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1814.3 1603 59.5
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1788.5 1602 59.4
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1633.2 1230 68.0
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1632.8 1561 57.1
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1605.9 1105 72.8
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1566.6 1421 60.0
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1479.2 1375 58.0
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1474.5 1641 49.7
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1448.0 1208 61.3
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1437.9 979 72.9
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1422.1 1615 48.7
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1411.4 978 72.3
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1370.9 1582 47.2
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1181.4 1085 57.5
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1131.7 1618 44.0
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1111.7 735 74.8
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.0e-267 927.9 649 71.5
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 7.7e-239 832.0 623 68.1
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 5.2e-227 792.7 601 68.2
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 4.4e-226 789.6 586 68.9
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 9.5e-221 771.9 605 66.1
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.7e-220 769.6 594 66.8
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 2.0e-218 764.2 533 72.4
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 4.6e-215 753.1 652 61.0
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.1e-199 701.0 511 69.5
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.3e-193 681.8 518 67.8
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 3.6e-180 637.1 643 53.3
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 5.8e-178 629.8 516 64.3
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 2.7e-175 620.9 514 64.8
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.6e-167 595.1 491 63.1
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 3.0e-166 590.9 516 61.2
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.9e-165 588.2 556 57.2
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 5.1e-158 563.5 418 71.1
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 4.3e-157 560.5 482 62.0
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 6.5e-145 520.0 341 75.7
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 3.4e-138 497.7 360 71.7
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 7.7e-130 469.9 325 73.5
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 6.1e-119 433.7 292 76.4
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 6.8e-118 430.3 358 61.5
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 9.1e-115 419.9 327 65.4
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.2e-114 419.5 398 56.5
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.4e-107 396.0 320 62.5
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.9e-104 385.6 317 62.1
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.6e-103 382.5 405 51.6
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 1.7e-100 372.5 248 71.8
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 2.2e-84 318.9 247 63.6
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.1e-67 263.5 209 65.1
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 5.3e-62 244.6 160 75.6
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 9.0e-62 243.8 142 79.6
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 1.1e-59 236.9 162 70.4
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.2e-53 216.9 199 60.3
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 5.8e-53 214.5 142 76.1
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 7.6e-53 214.2 146 71.9
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 2.9e-44 185.7 122 74.6
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 2.1e-42 179.5 177 56.5
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.8e-38 166.4 139 61.2
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 3.9e-33 148.7 101 69.3
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.7e-31 143.3 101 65.3
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 2.2e-31 142.9 143 54.5
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 2.8e-31 142.5 91 72.5
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 2.5e-27 129.4 100 59.0
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.9e-26 124.4 82 73.2
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.9e-26 124.4 82 73.2
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.9e-26 124.4 82 73.2
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.9e-26 124.4 82 73.2
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.9e-26 124.4 82 73.2
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 7.9e-26 124.4 82 73.2
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.8e-25 123.2 128 53.1
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.0e-24 119.8 108 63.9
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 5.3e-22 111.7 80 63.8
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 5.0e-20 105.1 88 59.1
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 8.5e-20 104.4 88 58.0
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.2e-19 102.4 117 49.6
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.5e-19 101.7 117 49.6
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 7.2e-19 101.3 100 54.0
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.2e-15 89.7 75 56.0
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.4e-14 87.0 82 58.5
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 5.3e-14 85.1 55 69.1
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 6.5e-12 78.2 49 63.3
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 2.1e-10 73.2 135 40.7
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 2.7e-10 72.8 50 70.0
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 3.6e-10 72.4 59 57.6
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 2.0e-08 66.6 52 59.6
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.3e-07 63.9 51 54.9
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 9.1e-06 57.8 55 52.7


User provided reference genes

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