Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy311s003 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 3.7e-38 161.0 78 100.0
Aqoxy2G02946 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 5.9e-28 127.1 100 71.0
TAR633G0870 Trochodendron aralioides HOM05D002454 ORTHO05D002581 1.7e-19 99.0 100 56.0
Nitab4.5_0005362g0040 Nicotiana tabacum HOM05D002454 ORTHO05D002581 6.6e-19 97.1 100 57.0
Nn3g21488 Nelumbo nucifera HOM05D002454 ORTHO05D002581 8.6e-19 96.7 100 56.0
PSO407G0328 Papaver somniferum HOM05D002454 ORTHO05D002581 1.1e-18 96.3 97 57.7
TAR362G1065 Trochodendron aralioides HOM05D002454 ORTHO05D002581 1.1e-18 96.3 100 54.0
Nitab4.5_0002761g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.9e-18 95.5 110 51.8
PSO170G3553 Papaver somniferum HOM05D002454 ORTHO05D002581 2.5e-18 95.1 97 56.7
Migut.N00091 Erythranthe guttata HOM05D002454 ORTHO05D002581 1.2e-17 92.8 100 57.0
SalBow2G3642 Salvia bowleyana HOM05D002454 ORTHO05D002581 1.2e-17 92.8 78 64.1
Atru.chr2.78 Acer truncatum HOM05D002454 ORTHO05D002581 2.1e-17 92.0 100 54.0
Haze_04132 Corylus avellana HOM05D002454 ORTHO05D002581 3.6e-17 91.3 98 56.1
Lsat_1_v5_gn_9_124081 Lactuca sativa HOM05D002454 ORTHO05D002581 4.7e-17 90.9 102 52.9
ClCG03G017350 Citrullus lanatus HOM05D002454 ORTHO05D002581 1.0e-16 89.7 100 54.0
HanXRQChr09g0248141 Helianthus annuus HOM05D002454 ORTHO05D002581 1.4e-16 89.4 95 52.6
Sed0014863 Sechium edule HOM05D002454 ORTHO05D002581 1.4e-16 89.4 100 53.0
Lsat_1_v5_gn_7_72000 Lactuca sativa HOM05D002454 ORTHO05D002581 1.8e-16 89.0 102 54.9
TAR636G0741 Trochodendron aralioides HOM05D002454 ORTHO05D002581 1.8e-16 89.0 100 49.0
Manes.08G116900 Manihot esculenta HOM05D002454 ORTHO05D002581 2.3e-16 88.6 99 54.5
ATR0796G294 Amborella trichopoda HOM05D002454 ORTHO05D002581 3.0e-16 88.2 96 52.1
CANSAT54G0741 Cannabis sativa HOM05D002454 ORTHO05D002581 4.0e-16 87.8 99 52.5
Sabra13G0013500 Salix brachista HOM05D002454 ORTHO05D002581 4.0e-16 87.8 91 53.8
Sabra13G0017600 Salix brachista HOM05D002454 ORTHO05D002581 4.0e-16 87.8 91 53.8
CSS0006290 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 5.2e-16 87.4 100 52.0
CSS0039594 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 5.2e-16 87.4 100 52.0
CiPaw.07G022000 Carya illinoinensis HOM05D002454 ORTHO05D002581 5.2e-16 87.4 100 51.0
MELO3C015302.2 Cucumis melo HOM05D002454 ORTHO05D002581 5.2e-16 87.4 100 53.0
CsaV3_1G038780 Cucumis sativus L. HOM05D002454 ORTHO05D002581 5.2e-16 87.4 100 53.0
CiPaw.08G161500 Carya illinoinensis HOM05D002454 ORTHO05D002581 6.8e-16 87.0 100 52.0
CSS0003270 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.5e-15 85.9 98 53.1
Ciclev10002947m.g Citrus clementina HOM05D002454 ORTHO05D002581 1.5e-15 85.9 100 53.0
Sabra05G0030000 Salix brachista HOM05D002454 ORTHO05D002581 1.5e-15 85.9 100 51.0
Hma1.2p1_3694F.1_g337270 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 2.0e-15 85.5 88 55.7
Eucgr.H04538 Eucalyptus grandis HOM05D002454 ORTHO05D002581 3.4e-15 84.7 100 50.0
Prupe.6G319900 Prunus persica HOM05D002454 ORTHO05D002581 3.4e-15 84.7 100 50.0
CAN.G1485.4 Capsicum annuum HOM05D002454 ORTHO05D002581 5.7e-15 84.0 96 55.2
ECA236G1977 Erigeron canadensis HOM05D002454 ORTHO05D002581 5.7e-15 84.0 97 52.6
MD12G1212200 Malus domestica HOM05D002454 ORTHO05D002581 5.7e-15 84.0 90 52.2
PGR031G1098 Punica granatum HOM05D002454 ORTHO05D002581 5.7e-15 84.0 100 52.0
GSVIVG01035144001 Vitis vinifera HOM05D002454 ORTHO05D002581 5.7e-15 84.0 100 54.0
Peaxi162Scf00246g01119 Petunia axillaris HOM05D002454 ORTHO05D002581 9.8e-15 83.2 79 60.8
Rhsim07G0190100 Rhododendron simsii HOM05D002454 ORTHO05D002581 9.8e-15 83.2 98 51.0
MSTRG.10103 Avicennia marina HOM05D002454 ORTHO05D002581 1.3e-14 82.8 98 52.0
HanXRQChr11g0339891 Helianthus annuus HOM05D002454 ORTHO05D002581 1.3e-14 82.8 96 54.2
Potri.005G024500 Populus trichocarpa HOM05D002454 ORTHO05D002581 1.3e-14 82.8 100 49.0
MSTRG.24796 Avicennia marina HOM05D002454 ORTHO05D002581 1.7e-14 82.4 89 53.9
MD04G1199400 Malus domestica HOM05D002454 ORTHO05D002581 1.7e-14 82.4 90 51.1
Sopen01g028330 Solanum pennellii HOM05D002454 ORTHO05D002581 1.7e-14 82.4 95 53.7
PGSC0003DMG400011336 Solanum tuberosum HOM05D002454 ORTHO05D002581 1.7e-14 82.4 95 53.7
Aa31LG11G9520 Aethionema arabicum HOM05D002454 ORTHO05D002581 2.2e-14 82.0 100 51.0
Potri.013G015400 Populus trichocarpa HOM05D002454 ORTHO05D002581 2.2e-14 82.0 91 50.5
CSS0023853 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 4.9e-14 80.9 101 50.5
CSS0040486 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 4.9e-14 80.9 101 50.5
Solyc01g066720.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 4.9e-14 80.9 95 52.6
Ah.06g189860 Amaranthus hybridus HOM05D002454 ORTHO05D002581 6.3e-14 80.5 91 51.6
PGR031G0452 Punica granatum HOM05D002454 ORTHO05D002581 6.3e-14 80.5 100 48.0
Thecc.05G313800 Theobroma cacao HOM05D002454 ORTHO05D002581 6.3e-14 80.5 100 47.0
Migut.G00144 Erythranthe guttata HOM05D002454 ORTHO05D002581 8.3e-14 80.1 99 52.5
CSS0013533 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.1e-13 79.7 96 52.1
Gohir.A11G268400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.1e-13 79.7 100 49.0
Gorai.007G300500 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.1e-13 79.7 100 49.0
Duzib106G1307 Durio zibethinus HOM05D002454 ORTHO05D002581 1.4e-13 79.3 98 49.0
Hma1.2p1_1292F.1_g273860 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 1.4e-13 79.3 112 45.5
Hma1.2p1_1292F.1_g273861 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 1.4e-13 79.3 112 45.5
MBI05_g23047_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 1.4e-13 79.3 101 48.5
Cc02_g34220 Coffea canephora HOM05D002454 ORTHO05D002581 1.8e-13 79.0 97 49.5
Eucgr.B01597 Eucalyptus grandis HOM05D002454 ORTHO05D002581 1.8e-13 79.0 89 51.7
Mapoly0182s0019 Marchantia polymorpha HOM05D002454 ORTHO05D002581 2.4e-13 78.6 83 55.4
Cc03_g01740 Coffea canephora HOM05D002454 ORTHO05D002581 3.2e-13 78.2 100 51.0
Duzib128G1382 Durio zibethinus HOM05D002454 ORTHO05D002581 3.2e-13 78.2 100 46.0
Carub.0003s0485 Capsella rubella HOM05D002454 ORTHO05D002581 4.1e-13 77.8 100 50.0
Gohir.D11G278300 Gossypium hirsutum HOM05D002454 ORTHO05D002581 4.1e-13 77.8 100 48.0
Gohir.D13G180400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 4.1e-13 77.8 95 46.3
Hund24891 Selenicereus undatus HOM05D002454 ORTHO05D002581 4.1e-13 77.8 89 51.7
Aa31LG5G15820 Aethionema arabicum HOM05D002454 ORTHO05D002581 5.4e-13 77.4 100 49.0
Gohir.A13G174600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 5.4e-13 77.4 90 48.9
Gorai.013G205800 Gossypium raimondii HOM05D002454 ORTHO05D002581 5.4e-13 77.4 90 48.9
Manes.09G171100 Manihot esculenta HOM05D002454 ORTHO05D002581 7.0e-13 77.0 90 48.9
THA.LOC104802794 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 7.0e-13 77.0 100 48.0
AL3G16170 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 9.2e-13 76.6 100 49.0
CARHR079950 Cardamine hirsuta HOM05D002454 ORTHO05D002581 1.2e-12 76.3 100 48.0
Cpa.g.sc327.6 Carica papaya HOM05D002454 ORTHO05D002581 1.2e-12 76.3 100 47.0
COL.COLO4_10529 Corchorus olitorius HOM05D002454 ORTHO05D002581 1.6e-12 75.9 90 45.6
Oeu017262.1 Olea europaea HOM05D002454 ORTHO05D002581 1.6e-12 75.9 96 50.0
THA.LOC104818724 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 1.6e-12 75.9 100 48.0
AT3G05550 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 2.0e-12 75.5 100 49.0
BcaNung04751 Brassica carinata HOM05D002454 ORTHO05D002581 2.7e-12 75.1 91 49.5
BraA06t26657Z Brassica rapa HOM05D002454 ORTHO05D002581 2.7e-12 75.1 91 49.5
Duzib177G0919 Durio zibethinus HOM05D002454 ORTHO05D002581 3.5e-12 74.7 100 46.0
Sp3g04400 Schrenkiella parvula HOM05D002454 ORTHO05D002581 3.5e-12 74.7 100 48.0
BcaC03g17802 Brassica carinata HOM05D002454 ORTHO05D002581 4.6e-12 74.3 91 49.5
BolC2t11893H Brassica oleracea HOM05D002454 ORTHO05D002581 4.6e-12 74.3 91 49.5
CDE09G0549 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 4.6e-12 74.3 100 48.0
Sp2g20920 Schrenkiella parvula HOM05D002454 ORTHO05D002581 4.6e-12 74.3 91 49.5
BcaB07g34201 Brassica carinata HOM05D002454 ORTHO05D002581 5.9e-12 73.9 91 48.4
CDE02G0786 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 5.9e-12 73.9 87 51.7
Cfa006636 Carpinus fangiana HOM05D002454 ORTHO05D002581 7.8e-12 73.6 47 80.9
MSTRG.20409 Avicennia marina HOM05D002454 ORTHO05D002581 1.0e-11 73.2 85 51.8
A02p38750 Brassica napus HOM05D002454 ORTHO05D002581 1.0e-11 73.2 91 48.4
AL6G39160 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 1.3e-11 72.8 91 50.5
Os07g0673900 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 1.3e-11 72.8 102 44.1
TWI12G0909 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 1.3e-11 72.8 89 46.1
Carub.0006s2479 Capsella rubella HOM05D002454 ORTHO05D002581 1.7e-11 72.4 91 49.5
FvH4_6g06640 Fragaria vesca HOM05D002454 ORTHO05D002581 1.7e-11 72.4 99 44.4
FAN02G0394 Fragaria x ananassa HOM05D002454 ORTHO05D002581 1.7e-11 72.4 99 44.4
FAN05G1278 Fragaria x ananassa HOM05D002454 ORTHO05D002581 1.7e-11 72.4 99 44.4
FAN14G3867 Fragaria x ananassa HOM05D002454 ORTHO05D002581 1.7e-11 72.4 99 44.4
QL03p020088 Quercus lobata HOM05D002454 ORTHO05D002581 1.7e-11 72.4 105 44.8
FAN09G3878 Fragaria x ananassa HOM05D002454 ORTHO05D002581 2.9e-11 71.6 99 44.4
Thhalv10005192m.g Eutrema salsugineum HOM05D002454 ORTHO05D002581 5.0e-11 70.9 91 46.2
Sc09g0002920 Simmondsia chinensis HOM05D002454 ORTHO05D002581 5.0e-11 70.9 101 45.5
RcHm_v2.0_Chr3g0455841 Rosa chinensis HOM05D002454 ORTHO05D002581 8.6e-11 70.1 88 44.3
TPR.G17721 Trifolium pratense HOM05D002454 ORTHO05D002581 8.6e-11 70.1 87 48.3
CARHR186270 Cardamine hirsuta HOM05D002454 ORTHO05D002581 1.1e-10 69.7 91 47.3
Sc19g0005280 Simmondsia chinensis HOM05D002454 ORTHO05D002581 1.5e-10 69.3 66 59.1
AUR62000754 Chenopodium quinoa HOM05D002454 ORTHO05D002581 2.5e-10 68.6 98 45.9
SEGI_24572 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 3.3e-10 68.2 87 46.0
DCAR_027067 Daucus carota HOM05D002454 ORTHO05D002581 4.3e-10 67.8 89 48.3
PGSC0003DMG400024718 Solanum tuberosum HOM05D002454 ORTHO05D002581 4.3e-10 67.8 85 47.1
Sc19g0005380 Simmondsia chinensis HOM05D002454 ORTHO05D002581 9.5e-10 66.6 36 91.7
vmacro15225 Vaccinium macrocarpon HOM05D002454 ORTHO05D002581 9.5e-10 66.6 46 78.3
Glyma.20G236900 Glycine max HOM05D002454 ORTHO05D002581 1.2e-09 66.2 82 47.6
CAN.G1459.20 Capsicum annuum HOM05D002454 ORTHO05D002581 1.6e-09 65.9 88 45.5
Dinv30821 Davidia involucrata HOM05D046959 ORTHO05D002581 1.6e-09 65.9 47 74.5
Lalb_Chr06g0167731 Lupinus albus HOM05D002454 ORTHO05D002581 1.6e-09 65.9 81 48.1
TWI36G0108 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 1.6e-09 65.9 97 42.3
Ca_10141_v3 Cicer arietinum L. HOM05D002454 ORTHO05D002581 2.8e-09 65.1 82 47.6
Glyma.10G151300 Glycine max HOM05D002454 ORTHO05D002581 2.8e-09 65.1 84 45.2
Medtr1g083420 Medicago truncatula HOM05D002454 ORTHO05D002581 2.8e-09 65.1 83 47.0
Lj5g0022176 Lotus japonicus HOM05D002454 ORTHO05D002581 3.6e-09 64.7 81 46.9
Oeu035681.1 Olea europaea HOM05D002454 ORTHO05D002581 3.6e-09 64.7 42 78.6
Zm00001eb245840 Zea mays HOM05D002454 ORTHO05D002581 3.6e-09 64.7 100 41.0
Solyc01g099820.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 6.2e-09 63.9 85 44.7
Sopen01g043330 Solanum pennellii HOM05D002454 ORTHO05D002581 6.2e-09 63.9 85 44.7
Zm00001eb183530 Zea mays HOM05D002454 ORTHO05D002581 6.2e-09 63.9 100 41.0
Zm00001eb111350 Zea mays HOM05D002454 ORTHO05D002581 1.0e-08 63.2 85 45.9
Lalb_Chr02g0148071 Lupinus albus HOM05D002454 ORTHO05D002581 1.4e-08 62.8 81 45.7
Pp3c8_8060 Physcomitrium patens HOM05D002454 ORTHO05D002581 1.4e-08 62.8 82 47.6
Nitab4.5_0003985g0020 Nicotiana tabacum HOM05D002454 ORTHO05D002581 1.8e-08 62.4 85 47.1
Hund21716 Selenicereus undatus HOM05D002454 ORTHO05D002581 1.8e-08 62.4 91 41.8
Sopen00g005600 Solanum pennellii HOM05D002454 ORTHO05D002581 1.8e-08 62.4 85 43.5
BolC7t44640H Brassica oleracea HOM05D002454 ORTHO05D002581 2.3e-08 62.0 39 82.1
Phvul.007G197500 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 2.3e-08 62.0 82 46.3
Rhsim02G0008300 Rhododendron simsii HOM05D002454 ORTHO05D002581 2.3e-08 62.0 47 72.3
EL10Ac4g09906 Beta vulgaris HOM05D002454 ORTHO05D002581 4.0e-08 61.2 91 42.9
Os02g0592400 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 4.0e-08 61.2 100 38.0
Lalb_Chr21g0310561 Lupinus albus HOM05D002454 ORTHO05D002581 5.2e-08 60.8 84 45.2
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 6.8e-08 60.5 38 81.6
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 6.8e-08 60.5 38 81.6
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 6.8e-08 60.5 38 81.6
Nitab4.5_0005783g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 6.8e-08 60.5 36 80.6
HPP92_019157 Vanilla planifolia HOM05D002454 ORTHO05D002581 1.5e-07 59.3 93 43.0
A02p38900 Brassica napus HOM05D002454 ORTHO05D002581 2.0e-07 58.9 38 78.9
arahy.Tifrunner.gnm1.ann1.0W5UIW Arachis hypogaea HOM05D002454 ORTHO05D002581 2.6e-07 58.5 100 40.0
arahy.Tifrunner.gnm1.ann1.QD5JHM Arachis hypogaea HOM05D002454 ORTHO05D002581 2.6e-07 58.5 100 40.0
Psat6g150840 Pisum sativum HOM05D002454 ORTHO05D002581 2.6e-07 58.5 84 38.1
Hund07103 Selenicereus undatus HOM05D002454 ORTHO05D002581 3.4e-07 58.2 87 41.4
Pp3c23_8640 Physcomitrium patens HOM05D002454 ORTHO05D002581 4.4e-07 57.8 82 43.9
AagrBONN_evm.TU.Sc2ySwM_362.2105 Anthoceros agrestis HOM05D002454 ORTHO05D002581 5.8e-07 57.4 34 82.4
Oeu043338.1 Olea europaea HOM05D001586 ORTHO05D001543 2.2e-06 55.5 36 75.0
SGA_v2.0_scaffold91G28002 Striga asiatica HOM05D002454 ORTHO05D002581 8.3e-06 53.5 26 100.0


User provided reference genes

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