Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 0.0e+00 1233.0 631 100.0
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 9.6e-286 986.5 631 80.7
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 8.1e-285 983.4 616 82.3
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 8.4e-282 973.4 636 78.8
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 2.3e-279 965.3 576 83.7
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.1e-278 963.0 577 83.9
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 4.3e-278 961.1 611 79.4
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.3e-277 959.5 627 78.6
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 5.3e-276 954.1 580 81.9
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 9.0e-276 953.4 626 78.1
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.5e-275 952.6 575 84.3
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 3.4e-275 951.4 619 79.6
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 3.8e-274 948.0 627 77.7
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.8e-274 948.0 628 77.1
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 6.4e-274 947.2 577 82.7
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.4e-273 945.3 608 78.9
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 9.3e-273 943.3 572 82.2
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 9.3e-273 943.3 571 82.1
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.2e-272 943.0 576 81.8
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 3.5e-272 941.4 619 78.2
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 3.9e-271 937.9 584 82.2
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 8.7e-271 936.8 574 81.5
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 1.1e-270 936.4 577 81.5
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 2.5e-270 935.3 577 81.5
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 3.3e-270 934.9 615 77.6
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 4.3e-270 934.5 584 81.8
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.6e-270 934.1 615 77.4
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 7.4e-270 933.7 606 78.1
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 3.7e-269 931.4 614 77.7
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 4.8e-269 931.0 580 80.7
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.8e-269 931.0 580 80.3
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 8.1e-269 930.2 583 81.1
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.8e-268 929.1 580 80.5
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 5.3e-268 927.5 577 80.2
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.3e-268 927.5 602 78.2
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.5e-267 924.5 611 77.6
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 4.5e-267 924.5 581 80.2
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 4.5e-267 924.5 626 77.8
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 5.8e-267 924.1 628 75.8
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 9.9e-267 923.3 577 79.9
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 2.9e-266 921.8 577 79.7
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.9e-266 921.0 610 76.1
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 6.4e-266 920.6 578 80.4
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 8.4e-266 920.2 602 76.2
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.1e-265 919.8 613 78.0
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 4.2e-265 917.9 577 79.7
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 5.5e-265 917.5 604 78.8
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.3e-262 907.9 625 74.6
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.3e-262 907.9 628 74.8
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 5.6e-262 907.5 628 75.0
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.8e-261 905.2 578 79.9
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 2.8e-261 905.2 578 79.2
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 3.7e-261 904.8 578 79.2
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 1.1e-260 903.3 627 75.0
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 1.8e-260 902.5 572 78.8
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 9.0e-260 900.2 578 78.5
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.5e-259 899.4 578 79.8
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.5e-259 899.4 610 75.4
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.0e-259 899.0 577 79.7
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.6e-259 898.7 628 73.7
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 1.3e-258 896.3 572 78.7
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 2.2e-258 895.6 578 78.2
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.5e-258 894.0 606 75.9
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 2.5e-257 892.1 572 78.3
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.2e-256 889.8 577 78.9
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.2e-256 889.8 582 78.4
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 3.5e-256 888.3 564 81.9
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 3.0e-255 885.2 605 74.5
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.5e-254 882.9 577 77.5
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.5e-254 882.1 575 77.9
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 4.3e-254 881.3 611 74.3
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 1.3e-253 879.8 578 76.6
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 2.2e-253 879.0 572 78.7
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 3.7e-253 878.2 601 74.4
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.2e-251 873.2 572 77.6
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 1.2e-251 873.2 572 76.7
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 7.9e-248 860.5 576 76.4
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 3.3e-246 855.1 520 81.3
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 4.3e-246 854.7 563 77.6
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.8e-245 852.0 632 71.4
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.1e-244 850.1 631 70.7
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 1.8e-244 849.4 608 71.9
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 2.0e-243 845.9 574 75.6
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.0e-242 843.6 581 74.2
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.3e-242 843.2 579 73.7
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 6.5e-242 840.9 574 73.3
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.1e-241 840.1 578 74.2
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 2.5e-241 839.0 642 69.2
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.5e-241 839.0 571 75.5
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 4.7e-240 834.7 570 74.7
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 7.9e-240 833.9 570 74.7
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.1e-238 830.1 568 74.1
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.5e-238 829.7 570 74.4
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 4.4e-238 828.2 571 73.9
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.3e-237 826.6 574 73.5
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.7e-237 826.2 610 71.5
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 2.2e-237 825.9 568 74.3
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.2e-237 825.9 570 74.2
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 9.1e-236 820.5 572 74.0
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 2.6e-235 818.9 570 73.5
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.5e-235 818.1 590 71.9
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.0e-234 817.0 574 73.2
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.0e-234 817.0 574 73.2
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.3e-234 816.6 580 73.1
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 3.2e-233 812.0 582 71.6
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.2e-232 810.1 582 71.6
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 4.7e-232 808.1 582 71.3
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.0e-231 807.0 576 71.4
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 1.4e-231 806.6 612 67.3
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.9e-231 805.1 596 70.3
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.9e-231 805.1 567 72.1
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 8.8e-231 803.9 549 74.0
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 5.7e-230 801.2 548 73.9
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 1.4e-228 796.6 582 70.6
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.0e-226 790.4 579 70.5
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.0e-226 790.4 579 70.5
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.5e-225 785.8 553 75.0
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 6.7e-223 777.7 579 69.9
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 6.3e-221 771.2 621 67.8
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.1e-220 768.5 575 69.7
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 7.0e-220 767.7 519 76.7
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 9.1e-220 767.3 553 71.2
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 5.0e-218 761.5 584 67.6
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 6.5e-218 761.1 537 70.9
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 6.5e-218 761.1 535 73.3
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 9.4e-217 757.3 482 78.2
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-215 753.1 537 71.3
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.0e-214 749.6 574 68.6
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 4.8e-213 745.0 583 66.2
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.6e-206 722.6 519 71.9
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 6.3e-205 718.0 531 70.1
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.3e-205 717.6 565 66.7
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 8.3e-205 717.6 622 64.8
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.6e-203 713.4 537 68.9
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 4.5e-203 711.8 621 63.9
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-202 710.7 541 67.7
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.9e-201 706.4 421 83.1
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.7e-200 701.8 412 83.7
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 2.6e-198 696.0 412 83.7
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 1.2e-195 687.2 415 82.7
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-192 677.2 529 66.4
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 1.8e-191 673.3 517 67.9
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 5.2e-191 671.8 495 69.3
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.4e-188 662.9 528 64.8
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 6.2e-176 621.7 467 72.6
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 5.6e-169 598.6 579 53.7
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.1e-159 566.2 383 74.4
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.2e-158 564.3 476 60.5
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 2.9e-149 533.1 534 55.8
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 8.4e-149 531.6 348 78.7
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.5e-139 499.6 344 75.3
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.2e-133 480.3 459 58.4
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 1.4e-106 391.3 239 81.2
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 6.2e-75 286.2 157 90.4
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 5.6e-68 263.1 145 91.0
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.4e-47 194.5 198 51.5
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 3.5e-46 190.7 198 50.5
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 3.9e-45 187.2 164 56.7
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 2.5e-44 184.5 164 56.1
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 9.3e-39 166.0 123 68.3
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 2.7e-38 164.5 98 84.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.1e-27 128.3 99 65.7
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.4e-23 115.5 90 64.4
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.0e-21 109.4 115 53.9
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-20 105.9 275 30.5
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 5.7e-20 103.6 60 86.7
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-19 102.4 312 28.2
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.1e-15 89.4 187 31.0
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 2.5e-15 88.2 100 54.0
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 5.5e-15 87.0 86 54.7
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 2.1e-14 85.1 70 72.9
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 2.7e-14 84.7 123 39.0
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-12 79.0 217 31.3
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.4e-09 67.8 66 59.1
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.9e-08 64.7 53 52.8
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 7.2e-07 60.1 56 57.1


User provided reference genes

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