Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G04121 Aquilegia oxysepala HOM05D008235 ORTHO05D009358 0.0e+00 1114.4 557 100.0
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 2.2e-52 211.1 646 32.0
TAR365G0029 Trochodendron aralioides HOM05D008235 ORTHO05D009358 1.4e-51 208.4 518 33.2
TAR636G0036 Trochodendron aralioides HOM05D008235 ORTHO05D009358 2.2e-36 157.9 508 29.9
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 5.0e-28 130.2 613 27.4
PSO675G1581 Papaver somniferum HOM05D066249 ORTHO05D009358 1.1e-27 129.0 443 32.7
PSO017G5357 Papaver somniferum HOM05D066249 ORTHO05D009358 3.2e-27 127.5 381 34.6
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 3.2e-27 127.5 598 28.3
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 3.0e-25 120.9 604 27.8
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 1.2e-24 119.0 577 26.2
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 7.5e-24 116.3 584 27.9
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 2.8e-23 114.4 598 28.6
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 8.2e-23 112.8 400 31.8
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 2.0e-21 108.2 579 26.3
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 8.5e-20 102.8 597 28.1
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 1.9e-19 101.7 345 30.7
Gorai.011G142400 Gossypium raimondii HOM05D008235 ORTHO05D009358 1.9e-19 101.7 590 26.8
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 5.5e-19 100.1 475 28.2
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 1.2e-18 99.0 578 26.3
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 6.1e-18 96.7 596 27.0
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 1.0e-17 95.9 601 27.1
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 3.0e-17 94.4 598 25.8
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 6.8e-17 93.2 292 30.5
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 8.8e-17 92.8 517 25.0
AL5G41340 Arabidopsis lyrata HOM05D009929 ORTHO05D009358 9.8e-16 89.4 321 29.0
AUR62015381 Chenopodium quinoa HOM05D019141 ORTHO05D009358 2.8e-15 87.8 257 29.2
MD04G1040900 Malus domestica HOM05D008235 ORTHO05D009358 2.8e-15 87.8 454 27.3
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 1.8e-14 85.1 535 26.0
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 7.0e-14 83.2 319 28.8
AUR62002309 Chenopodium quinoa HOM05D019141 ORTHO05D009358 1.2e-13 82.4 261 28.4
CiPaw.01G099800 Carya illinoinensis HOM05D008235 ORTHO05D009358 4.5e-13 80.5 260 32.7
Carub.0005s2617 Capsella rubella HOM05D009929 ORTHO05D009358 5.9e-13 80.1 319 27.6
RhsimUnG0195000 Rhododendron simsii HOM05D008235 ORTHO05D009358 5.9e-13 80.1 292 29.5
ATR0824G133 Amborella trichopoda HOM05D008235 ORTHO05D009358 1.7e-12 78.6 332 28.6
GSVIVG01010760001 Vitis vinifera HOM05D008235 ORTHO05D009358 1.7e-12 78.6 532 25.0
THA.LOC104803712 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 2.9e-12 77.8 264 27.3
vmacro00622 Vaccinium macrocarpon HOM05D008235 ORTHO05D009358 1.1e-11 75.9 111 43.2
AT3G59430 Arabidopsis thaliana HOM05D009929 ORTHO05D009358 1.9e-11 75.1 352 27.6
Sp5g03710 Schrenkiella parvula HOM05D009929 ORTHO05D009358 2.5e-11 74.7 321 27.7
Duzib268G0443 Durio zibethinus HOM05D008235 ORTHO05D009358 4.2e-11 73.9 216 29.6
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 5.5e-11 73.6 398 27.6
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 1.6e-10 72.0 581 23.9
Solyc05g050740.3 Solanum lycopersicum HOM05D014650 ORTHO05D009358 1.6e-10 72.0 320 26.9
Phvul.011G054200 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 2.8e-10 71.2 434 26.3
arahy.Tifrunner.gnm1.ann1.TK6P88 Arachis hypogaea HOM05D008235 ORTHO05D009358 4.7e-10 70.5 435 27.4
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 8.0e-10 69.7 79 45.6
Lalb_Chr22g0352131 Lupinus albus HOM05D008235 ORTHO05D009358 8.0e-10 69.7 467 27.6
Eucgr.A00083 Eucalyptus grandis HOM05D008235 ORTHO05D009358 1.0e-09 69.3 77 49.4
Thhalv10005962m.g Eutrema salsugineum HOM05D009929 ORTHO05D009358 1.0e-09 69.3 319 27.3
BraA09t40607Z Brassica rapa HOM05D009929 ORTHO05D009358 1.4e-09 68.9 318 26.7
Aa31LG1G25120 Aethionema arabicum HOM05D009929 ORTHO05D006942 1.8e-09 68.6 239 28.5
Lj3g0014084 Lotus japonicus HOM05D008235 ORTHO05D009358 1.8e-09 68.6 421 27.8
Sopen05g029150 Solanum pennellii HOM05D014650 ORTHO05D022197 2.3e-09 68.2 314 27.1
A09p51710 Brassica napus HOM05D009929 ORTHO05D009358 3.0e-09 67.8 318 26.7
MELO3C017713.2 Cucumis melo HOM05D008235 ORTHO05D009358 3.0e-09 67.8 387 27.1
CsaV3_4G003430 Cucumis sativus L. HOM05D008235 ORTHO05D009358 3.0e-09 67.8 392 25.8
CARHR169830 Cardamine hirsuta HOM05D009929 ORTHO05D009358 5.2e-09 67.0 298 28.5
Glyma.13G344300 Glycine max HOM05D008235 ORTHO05D009358 5.2e-09 67.0 114 33.3
VMungo1127G1046 Vigna mungo HOM05D008235 ORTHO05D009358 6.8e-09 66.6 394 26.1
Glyma.11G127600 Glycine max HOM05D008235 ORTHO05D009358 8.8e-09 66.2 372 25.8
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 8.8e-09 66.2 444 23.9
Os09g0514700 Oryza sativa ssp. japonica HOM05D028297 ORTHO05D037162 1.2e-08 65.9 343 22.7
BcaC07g40284 Brassica carinata HOM05D009929 ORTHO05D009358 1.5e-08 65.5 314 27.7
C08p34440 Brassica napus HOM05D009929 ORTHO05D009358 1.5e-08 65.5 314 27.7
BolC8t51045H Brassica oleracea HOM05D009929 ORTHO05D009358 1.5e-08 65.5 314 27.7
Glyma.12G052200 Glycine max HOM05D008235 ORTHO05D009358 1.5e-08 65.5 355 24.5
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 2.0e-08 65.1 69 49.3
CAN.G112.20 Capsicum annuum HOM05D014650 ORTHO05D022197 4.4e-08 63.9 305 28.5
arahy.Tifrunner.gnm1.ann1.V6VI7P Arachis hypogaea HOM05D008235 ORTHO05D009358 5.7e-08 63.5 432 25.5
HPP92_002743 Vanilla planifolia HOM05D028297 ORTHO05D037162 7.5e-08 63.2 166 31.9
Oeu053824.1 Olea europaea HOM05D008235 ORTHO05D009358 9.8e-08 62.8 456 24.1
Ca_20789_v3 Cicer arietinum L. HOM05D008235 ORTHO05D009358 1.3e-07 62.4 414 26.3
Gohir.D10G129000 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.3e-07 62.4 155 32.9
ClCG07G015680 Citrullus lanatus HOM05D008235 ORTHO05D009358 2.8e-07 61.2 383 26.1
EL10Ac3g05943 Beta vulgaris HOM05D019141 ORTHO05D009358 4.9e-07 60.5 68 48.5
Peaxi162Scf01052g00325 Petunia axillaris HOM05D014650 ORTHO05D009358 6.3e-07 60.1 292 25.3
TPR.G34237 Trifolium pratense HOM05D008235 ORTHO05D009358 8.3e-07 59.7 97 40.2
BcaC07g40472 Brassica carinata HOM05D009929 ORTHO05D009358 1.8e-06 58.5 269 26.0
Psat7g208600 Pisum sativum HOM05D008235 ORTHO05D009358 1.8e-06 58.5 234 31.2
Cpa.g.sc9.283 Carica papaya HOM05D008235 ORTHO05D009358 2.4e-06 58.2 93 36.6
Medtr4g067260 Medicago truncatula HOM05D008235 ORTHO05D009358 2.4e-06 58.2 398 24.6
Gohir.A03G088800 Gossypium hirsutum HOM05D008235 ORTHO05D009358 4.1e-06 57.4 529 24.2
Zm00001eb318370 Zea mays HOM05D028297 ORTHO05D037162 5.4e-06 57.0 593 23.8
Ah.13g072860 Amaranthus hybridus HOM05D019141 ORTHO05D009358 9.2e-06 56.2 391 25.3


User provided reference genes

Program Settings