Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G04085 Aquilegia oxysepala HOM05D004423 ORTHO05D005464 0.0e+00 3041.9 1533 100.0
TAR376G0159 Trochodendron aralioides HOM05D004423 ORTHO05D005464 0.0e+00 1663.3 1609 56.2
Nn7g38050 Nelumbo nucifera HOM05D004423 ORTHO05D005464 0.0e+00 1553.5 1633 52.8
MBI01_g09373_MAGBIO Magnolia biondii HOM05D004423 ORTHO05D005464 0.0e+00 1502.6 1577 51.6
PSO063G1777 Papaver somniferum HOM05D004423 ORTHO05D005464 0.0e+00 1501.1 1567 53.7
GSVIVG01023952001 Vitis vinifera HOM05D004423 ORTHO05D005464 0.0e+00 1463.4 1558 52.1
Actinidia18027 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1452.2 1597 50.1
Hma1.2p1_0032F.1_g019020 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 0.0e+00 1446.0 1593 50.7
Actinidia20541 Actinidia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1438.3 1605 49.3
Potri.009G139900 Populus trichocarpa HOM05D004423 ORTHO05D005464 0.0e+00 1426.8 1592 50.0
Cfa005315 Carpinus fangiana HOM05D004423 ORTHO05D005464 0.0e+00 1424.1 1587 49.3
QL11p053191 Quercus lobata HOM05D004423 ORTHO05D005464 0.0e+00 1424.1 1706 47.7
Sabra09G0108500 Salix brachista HOM05D004423 ORTHO05D005464 0.0e+00 1418.3 1589 49.7
Haze_02070 Corylus avellana HOM05D004423 ORTHO05D005464 0.0e+00 1414.8 1662 47.8
Dinv41903 Davidia involucrata HOM05D004423 ORTHO05D005464 0.0e+00 1407.5 1246 58.2
Manes.11G100750 Manihot esculenta HOM05D004423 ORTHO05D005464 0.0e+00 1400.2 1617 47.6
Duzib132G0529 Durio zibethinus HOM05D004423 ORTHO05D005464 0.0e+00 1387.5 1627 48.1
Gorai.002G201600 Gossypium raimondii HOM05D004423 ORTHO05D005464 0.0e+00 1378.2 1630 47.9
Thecc.02G052800 Theobroma cacao HOM05D004423 ORTHO05D005464 0.0e+00 1378.2 1631 47.0
Rhsim11G0195000 Rhododendron simsii HOM05D004423 ORTHO05D005464 0.0e+00 1377.1 1616 47.6
Gohir.A01G171600 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1372.1 1629 47.9
Prupe.8G172300 Prunus persica HOM05D004423 ORTHO05D005464 0.0e+00 1368.2 1552 49.2
vmacro02301 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 0.0e+00 1349.3 1633 46.6
Glyma.02G121200 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1345.5 1611 47.4
Lj2g0017242 Lotus japonicus HOM05D004423 ORTHO05D005464 0.0e+00 1332.4 1613 47.2
Ca_05030_v3 Cicer arietinum L. HOM05D004423 ORTHO05D005464 0.0e+00 1328.2 1583 46.8
RcHm_v2.0_Chr6g0279371 Rosa chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1322.4 1527 47.8
TPR.G38573 Trifolium pratense HOM05D004423 ORTHO05D005464 0.0e+00 1316.6 1593 46.8
Lalb_Chr17g0341361 Lupinus albus HOM05D004423 ORTHO05D005464 0.0e+00 1314.3 1614 46.5
MD10G1131500 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1312.0 1561 48.1
Gohir.D01G162500 Gossypium hirsutum HOM05D004423 ORTHO05D005464 0.0e+00 1310.4 1420 50.4
ClCG02G011090 Citrullus lanatus HOM05D004423 ORTHO05D005464 0.0e+00 1309.7 1627 46.2
Glyma.01G063600 Glycine max HOM05D004423 ORTHO05D005464 0.0e+00 1309.3 1612 46.3
FAN24G1532 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1306.2 1526 47.6
MD05G1128200 Malus domestica HOM05D004423 ORTHO05D005464 0.0e+00 1304.3 1566 48.8
FAN15G2581 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1303.9 1528 47.1
Oeu045082.1 Olea europaea HOM05D004423 ORTHO05D005464 0.0e+00 1302.0 1584 46.2
TWI75G0836 Tripterygium wilfordii HOM05D004423 ORTHO05D005464 0.0e+00 1301.2 1631 46.1
CANSAT25G0289 Cannabis sativa HOM05D004423 ORTHO05D005464 0.0e+00 1294.3 1581 46.2
Lj5C174T8 Lonicera japonica HOM05D004423 ORTHO05D005464 0.0e+00 1294.3 1240 53.9
Ciclev10027678m.g Citrus clementina HOM05D004423 ORTHO05D005464 0.0e+00 1293.5 1617 46.6
FvH4_2g15920 Fragaria vesca HOM05D004423 ORTHO05D005464 0.0e+00 1292.7 1529 47.2
FAN20G1295 Fragaria x ananassa HOM05D004423 ORTHO05D005464 0.0e+00 1286.9 1537 46.6
Phvul.003G039700 Phaseolus vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1285.4 1592 46.3
Sed0008640 Sechium edule HOM05D004423 ORTHO05D005464 0.0e+00 1283.1 1603 45.9
CsaV3_6G012570 Cucumis sativus L. HOM05D004423 ORTHO05D005464 0.0e+00 1261.9 1613 45.0
HanXRQChr17g0543821 Helianthus annuus HOM05D004423 ORTHO05D005464 0.0e+00 1259.2 1567 46.6
SalBow1G3590 Salvia bowleyana HOM05D004423 ORTHO05D005464 0.0e+00 1258.4 1599 45.3
Psat2g133680 Pisum sativum HOM05D004423 ORTHO05D005464 0.0e+00 1254.2 1545 46.1
DCAR_022414 Daucus carota HOM05D004423 ORTHO05D005464 0.0e+00 1252.3 1625 45.0
PGR042G3292 Punica granatum HOM05D004423 ORTHO05D005464 0.0e+00 1250.3 1598 46.2
arahy.Tifrunner.gnm1.ann1.YN7PRK Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1243.0 1621 43.9
MELO3C013664.2 Cucumis melo HOM05D004423 ORTHO05D005464 0.0e+00 1237.2 1648 44.7
arahy.Tifrunner.gnm1.ann1.CJIC4D Arachis hypogaea HOM05D004423 ORTHO05D005464 0.0e+00 1223.0 1782 40.9
CiPaw.05G087000 Carya illinoinensis HOM05D004423 ORTHO05D005464 0.0e+00 1221.8 1370 49.6
Migut.B00041 Erythranthe guttata HOM05D004423 ORTHO05D005464 0.0e+00 1221.5 1559 44.9
Peaxi162Scf00362g00356 Petunia axillaris HOM05D004423 ORTHO05D005464 0.0e+00 1220.3 1596 43.4
Medtr5g046240 Medicago truncatula HOM05D004423 ORTHO05D005464 0.0e+00 1215.7 1502 46.3
Nitab4.5_0003679g0020 Nicotiana tabacum HOM05D004423 ORTHO05D005464 0.0e+00 1211.8 1597 43.8
Cc00_g02430 Coffea canephora HOM05D004423 ORTHO05D005464 0.0e+00 1208.7 1561 45.1
Eucgr.G01811 Eucalyptus grandis HOM05D004423 ORTHO05D005464 0.0e+00 1204.1 1361 48.3
Sopen01g053960 Solanum pennellii HOM05D004423 ORTHO05D005464 0.0e+00 1204.1 1598 43.5
EL10Ac9g21318 Beta vulgaris HOM05D004423 ORTHO05D005464 0.0e+00 1202.2 1576 44.7
Ah.01g008070 Amaranthus hybridus HOM05D004423 ORTHO05D005464 0.0e+00 1197.6 1608 43.7
Solyc01g111910.3 Solanum lycopersicum HOM05D004423 ORTHO05D005464 0.0e+00 1194.1 1598 43.1
Hund06453 Selenicereus undatus HOM05D004423 ORTHO05D005464 0.0e+00 1193.7 1654 43.1
CAN.G1235.36 Capsicum annuum HOM05D004423 ORTHO05D005464 0.0e+00 1193.3 1598 42.9
ATR0322G068 Amborella trichopoda HOM05D004423 ORTHO05D005464 0.0e+00 1192.9 1654 43.2
ECA246G1499 Erigeron canadensis HOM05D004423 ORTHO05D005464 0.0e+00 1187.9 1572 44.5
AUR62009995 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1166.4 1698 42.5
Sc18g0006140 Simmondsia chinensis HOM05D004423 ORTHO05D005464 0.0e+00 1165.2 1606 43.6
AUR62012983 Chenopodium quinoa HOM05D004423 ORTHO05D005464 0.0e+00 1164.1 1582 44.2
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 0.0e+00 1162.1 1559 43.2
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 0.0e+00 1147.9 1586 43.0
THA.LOC104824748 Tarenaya hassleriana HOM05D004423 ORTHO05D005464 0.0e+00 1144.8 1599 42.5
CARHR294170 Cardamine hirsuta HOM05D004423 ORTHO05D005464 0.0e+00 1134.4 1545 42.1
Zm00001eb385260 Zea mays HOM05D004423 ORTHO05D005464 0.0e+00 1131.7 1571 42.4
AL7G10310 Arabidopsis lyrata HOM05D004423 ORTHO05D005464 0.0e+00 1125.9 1525 43.3
AT4G38440 Arabidopsis thaliana HOM05D004423 ORTHO05D005464 0.0e+00 1125.2 1557 42.5
Cpa.g.sc20.132 Carica papaya HOM05D004423 ORTHO05D005464 0.0e+00 1119.0 1427 45.5
Sp7g37340 Schrenkiella parvula HOM05D004423 ORTHO05D005464 0.0e+00 1111.7 1552 42.3
Carub.0007s0033 Capsella rubella HOM05D004423 ORTHO05D005464 0.0e+00 1107.0 1564 42.0
Atru.chr5.3471 Acer truncatum HOM05D004423 ORTHO05D005464 1.1e-308 1063.9 1477 43.0
VMungo1215G3113 Vigna mungo HOM05D004423 ORTHO05D005464 4.5e-305 1052.0 1086 50.4
SHI08411 Sapria himalayana HOM05D004423 ORTHO05D005464 2.5e-303 1046.2 1576 41.1
Thhalv10024216m.g Eutrema salsugineum HOM05D004423 ORTHO05D005464 3.6e-302 1042.3 1538 41.0
BolC4t26280H Brassica oleracea HOM05D004423 ORTHO05D005464 1.5e-300 1036.9 1371 44.0
SGA_v2.0_scaffold58G20334 Striga asiatica HOM05D004423 ORTHO05D005464 2.8e-299 1032.7 1465 42.0
unitig_21.g20846 Utricularia gibba HOM05D004423 ORTHO05D005464 1.8e-298 1030.0 1551 41.0
C04p46880 Brassica napus HOM05D004423 ORTHO05D005464 7.0e-298 1028.1 1334 44.4
BraA04t16972Z Brassica rapa HOM05D004423 ORTHO05D005464 5.9e-297 1025.0 1368 43.3
A04p13130 Brassica napus HOM05D004423 ORTHO05D005464 3.8e-296 1022.3 1359 43.5
Hma1.2p1_0032F.1_g019030 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 4.4e-292 1008.8 1016 52.8
SHI46553 Sapria himalayana HOM05D004423 ORTHO05D005464 7.0e-258 895.2 1551 37.3
Eucgr.E03994 Eucalyptus grandis HOM05D004423 ORTHO05D005464 6.6e-256 888.6 966 48.1
COL.COLO4_18006 Corchorus olitorius HOM05D004423 ORTHO05D005464 7.3e-255 885.2 1603 36.7
PSO782G0263 Papaver somniferum HOM05D004423 ORTHO05D005464 8.1e-230 802.0 1557 36.6
HPP92_024001 Vanilla planifolia HOM05D004423 ORTHO05D005464 8.4e-219 765.4 973 43.9
AagrBONN_evm.TU.Sc2ySwM_369.194 Anthoceros agrestis HOM05D004423 ORTHO05D005464 1.4e-194 684.9 1512 33.2
Pp3c6_25040 Physcomitrium patens HOM05D004423 ORTHO05D005464 1.1e-189 668.7 1610 31.7
Mapoly0006s0149 Marchantia polymorpha HOM05D004423 ORTHO05D005464 5.2e-176 623.2 1710 31.3
CDE09G0751 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 2.0e-175 621.3 802 44.8
Haze_02078 Corylus avellana HOM05D004423 ORTHO05D005464 2.6e-175 620.9 803 44.7
SEGI_28605 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 2.4e-173 614.4 902 40.5
Os06g0574400 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 2.8e-158 564.3 815 41.3
Medtr1g031840 Medicago truncatula HOM05D004423 ORTHO05D005464 1.0e-152 545.8 572 51.0
SMO119G0387 Selaginella moellendorffii HOM05D004423 ORTHO05D005464 2.2e-142 511.5 1474 29.8
Pp3c14_25290 Physcomitrium patens HOM05D004423 ORTHO05D005464 9.2e-141 506.1 1269 29.1
BcaB06g27461 Brassica carinata HOM05D004423 ORTHO05D005464 8.1e-137 493.0 717 41.4
CDE09G0821 Ceratophyllum demersum HOM05D004423 ORTHO05D005464 3.5e-132 477.6 682 43.5
SalBow1G2566 Salvia bowleyana HOM05D004423 ORTHO05D000248 1.1e-122 446.0 549 45.2
HPP92_023981 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.8e-112 412.1 490 47.3
FAN27G3078 Fragaria x ananassa HOM05D004423 ORTHO05D005464 1.9e-106 392.1 408 52.2
Hma1.2p1_0032F.1_g019040 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 7.1e-101 373.6 288 64.6
HPP92_023983 Vanilla planifolia HOM05D004423 ORTHO05D005464 2.5e-98 365.2 585 39.5
BcaB06g27462 Brassica carinata HOM05D004423 ORTHO05D005464 5.5e-93 347.4 575 38.1
HPP92_024002 Vanilla planifolia HOM05D004423 ORTHO05D005464 3.6e-68 265.0 413 41.2
Os06g0574450 Oryza sativa ssp. japonica HOM05D004423 ORTHO05D005464 6.7e-67 260.8 460 39.1
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 2.3e-59 235.7 233 54.5
CBR_g45642 Chara braunii HOM05D004423 ORTHO05D005464 5.0e-46 191.4 975 25.3
TAR717G0001 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.2e-44 186.8 127 69.3
VMungo1215G1157 Vigna mungo HOM05D004423 ORTHO05D005464 3.6e-36 158.7 396 33.1
ATR0564G023 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.7e-36 158.3 226 44.7
Atru.chr5.3470 Acer truncatum HOM05D004423 ORTHO05D005464 1.7e-33 149.8 130 58.5
Nitab4.5_0003603g0110 Nicotiana tabacum HOM05D004423 ORTHO05D005464 9.2e-32 144.1 129 58.9
Actinidia20527 Actinidia chinensis HOM05D004423 ORTHO05D005464 1.6e-31 143.3 277 36.1
Cpa.g.sc20.131 Carica papaya HOM05D004423 ORTHO05D000047 1.0e-30 140.6 128 55.5
vmacro11788 Vaccinium macrocarpon HOM05D004423 ORTHO05D005464 1.0e-30 140.6 158 44.3
ATR0316G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.1e-27 130.6 201 42.8
ATR0757G159 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.1e-27 130.6 201 42.3
ATR0116G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.3e-27 129.4 201 43.3
ATR0045G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.0e-27 128.6 198 42.4
SEGI_17262 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 2.0e-26 126.3 121 52.1
ATR0796G217 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.4e-26 125.6 163 43.6
Lj5A174T72 Lonicera japonica HOM05D004423 ORTHO05D005464 4.4e-26 125.2 305 34.1
VMungo1215G3389 Vigna mungo HOM05D004423 ORTHO05D005464 9.8e-26 124.0 137 52.6
Dinv41902 Davidia involucrata HOM05D004423 ORTHO05D005464 4.9e-25 121.7 275 37.1
ATR0757G178 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.1e-24 120.6 173 41.0
ATR0598G019 Amborella trichopoda HOM05D004423 ORTHO05D005464 3.5e-23 115.5 143 44.8
ATR0049G066 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.7e-20 105.1 140 44.3
ATR1016G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.2e-20 104.8 140 45.0
ATR0342G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 8.9e-19 100.9 140 44.3
ATR1002G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 2.6e-18 99.4 140 44.3
ATR0882G001 Amborella trichopoda HOM05D004423 ORTHO05D005464 4.4e-18 98.6 140 43.6
Medtr1g031850 Medicago truncatula HOM05D004423 ORTHO05D005464 1.7e-17 96.7 70 65.7
ATR0733G014 Amborella trichopoda HOM05D004423 ORTHO05D005464 1.9e-16 93.2 105 48.6
ATR0626G235 Amborella trichopoda HOM05D004423 ORTHO05D005464 6.0e-15 88.2 144 42.4
Hma1.2p1_0032F.1_g019010 Hydrangea macrophylla HOM05D004423 ORTHO05D005464 6.6e-14 84.7 121 40.5
Medtr2g060580 Medicago truncatula HOM05D004423 ORTHO05D005464 1.9e-13 83.2 62 62.9
CBR_g45640 Chara braunii HOM05D004423 ORTHO05D005464 4.3e-13 82.0 105 42.9
MCO15G359 Micromonas commoda HOM05D004423 ORTHO05D044124 2.6e-10 72.8 600 21.7
SEGI_14959 Sequoiadendron giganteum HOM05D004423 ORTHO05D005464 5.8e-10 71.6 350 24.3
HPP92_023982 Vanilla planifolia HOM05D004423 ORTHO05D005464 1.3e-09 70.5 119 32.8
Medtr2g060590 Medicago truncatula HOM05D004423 ORTHO05D005464 7.1e-08 64.7 101 38.6
Medtr2g060600 Medicago truncatula HOM05D004423 ORTHO05D005464 3.0e-06 59.3 80 41.2


User provided reference genes

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