Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 0.0e+00 1854.3 964 100.0
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.7e-82 311.2 1048 31.0
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 4.5e-77 293.9 1054 30.8
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.7e-47 195.7 591 34.0
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 1.2e-42 179.5 1119 25.8
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 3.0e-36 158.3 1061 25.5
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.1e-35 156.4 1063 26.5
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.9e-35 155.6 1197 23.8
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 7.5e-32 143.7 1045 26.9
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 2.2e-31 142.1 1028 25.3
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 1.2e-29 136.3 1098 25.0
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 2.3e-28 132.1 1200 24.3
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 3.9e-28 131.3 1059 24.7
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 3.9e-28 131.3 1082 25.1
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 3.9e-28 131.3 1114 25.9
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 9.5e-27 126.7 1130 23.7
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.8e-26 125.2 1096 23.4
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 3.6e-26 124.8 1061 24.5
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 8.1e-26 123.6 1208 24.6
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 1.1e-25 123.2 1066 25.9
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.4e-25 122.9 1073 24.6
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.4e-25 122.9 1208 24.8
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 5.2e-25 120.9 1128 24.3
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 1.2e-24 119.8 1045 24.9
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 2.6e-24 118.6 1144 24.3
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 3.4e-24 118.2 1111 24.0
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 4.4e-24 117.9 1036 24.6
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 1.7e-23 115.9 419 32.0
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 3.8e-23 114.8 1143 23.4
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 6.4e-23 114.0 1030 24.0
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 1.4e-22 112.8 1089 22.6
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.9e-22 112.5 1034 25.0
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 5.4e-22 110.9 1143 24.6
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 5.4e-22 110.9 1017 24.3
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 9.2e-22 110.2 1055 24.2
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.2e-21 109.8 407 31.9
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 2.7e-21 108.6 1065 24.1
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 3.5e-21 108.2 1100 23.5
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 3.5e-21 108.2 1073 23.6
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 4.6e-21 107.8 329 35.0
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 4.6e-21 107.8 1103 24.7
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 6.0e-21 107.5 1021 24.5
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 7.8e-21 107.1 1061 24.6
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 1.0e-20 106.7 267 36.0
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 1.3e-20 106.3 1011 22.5
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 3.0e-20 105.1 1114 23.2
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.9e-20 104.8 407 31.2
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.1e-20 104.4 406 31.3
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.1e-19 103.2 1142 23.5
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.1e-19 103.2 1110 22.9
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.5e-19 102.8 403 30.8
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.9e-19 102.4 381 32.0
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 2.5e-19 102.1 1107 22.7
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 2.5e-19 102.1 399 30.8
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 7.3e-19 100.5 256 34.0
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 9.6e-19 100.1 1132 21.6
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 1.2e-18 99.8 1056 23.7
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 3.6e-18 98.2 1031 23.3
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 3.6e-18 98.2 1012 23.5
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 4.7e-18 97.8 1107 22.0
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.4e-17 96.3 1009 23.6
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.4e-17 95.5 1068 23.6
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.1e-17 95.1 1006 25.7
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 4.0e-17 94.7 609 27.6
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 5.3e-17 94.4 600 25.7
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 5.3e-17 94.4 272 34.2
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 6.9e-17 94.0 251 36.3
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.5e-16 92.8 1014 22.8
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.6e-16 92.0 1010 23.7
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 3.4e-16 91.7 400 30.5
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 2.9e-15 88.6 999 23.5
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 3.8e-15 88.2 1095 23.5
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.9e-15 87.8 377 29.4
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 8.4e-15 87.0 1061 22.8
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.4e-14 86.3 326 29.4
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 3.2e-14 85.1 1052 22.5
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 7.1e-14 84.0 377 29.2
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 9.3e-14 83.6 1143 22.6
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 9.3e-14 83.6 1061 22.7
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 2.7e-13 82.0 92 45.7
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 4.6e-13 81.3 95 44.2
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 4.6e-13 81.3 212 34.0
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.6e-13 81.3 101 42.6
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 4.6e-13 81.3 89 46.1
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 6.0e-13 80.9 271 32.1
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 6.0e-13 80.9 112 39.3
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 7.8e-13 80.5 128 39.8
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.0e-12 80.1 93 41.9
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 1.7e-12 79.3 102 43.1
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 2.3e-12 79.0 89 46.1
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 2.3e-12 79.0 92 41.3
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.3e-12 79.0 105 42.9
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.3e-12 79.0 105 42.9
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 3.9e-12 78.2 89 47.2
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 3.9e-12 78.2 89 46.1
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 5.1e-12 77.8 104 43.3
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 5.1e-12 77.8 974 22.9
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.5e-11 76.3 255 30.6
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 2.5e-11 75.5 106 38.7
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 2.5e-11 75.5 92 44.6
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 3.3e-11 75.1 94 41.5
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.3e-11 75.1 1031 23.7
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 3.3e-11 75.1 240 33.3
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 4.3e-11 74.7 92 45.7
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 4.3e-11 74.7 273 28.9
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 4.3e-11 74.7 94 39.4
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 5.6e-11 74.3 90 44.4
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 5.6e-11 74.3 90 44.4
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 5.6e-11 74.3 811 22.9
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 7.3e-11 73.9 47 59.6
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 9.6e-11 73.6 135 37.0
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 1.3e-10 73.2 86 44.2
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 2.1e-10 72.4 106 37.7
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 2.1e-10 72.4 1118 22.1
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 6.2e-10 70.9 89 43.8
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-09 69.7 50 60.0
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 1.8e-09 69.3 342 27.2
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.0e-09 68.2 58 50.0
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 4.0e-09 68.2 86 44.2
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 9.0e-09 67.0 156 36.5
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 9.0e-09 67.0 84 38.1
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 9.0e-09 67.0 309 25.2
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 9.0e-09 67.0 991 23.7
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 1.2e-08 66.6 57 54.4
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 1.5e-08 66.2 135 38.5
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.0e-08 65.9 151 32.5
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 2.0e-08 65.9 179 30.2
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 2.6e-08 65.5 33 63.6
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 4.5e-08 64.7 54 50.0
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 5.8e-08 64.3 210 31.4
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 7.6e-08 63.9 32 71.9
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 6.4e-07 60.8 32 71.9
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 1.1e-06 60.1 114 36.0
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 1.9e-06 59.3 114 36.0
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 3.2e-06 58.5 384 22.9
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 4.2e-06 58.2 29 72.4
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 4.2e-06 58.2 140 32.1
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 9.3e-06 57.0 60 40.0


User provided reference genes

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