Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 2.5e-170 602.1 305 100.0
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 8.2e-49 198.4 298 41.6
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 6.5e-38 162.2 299 32.8
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 4.6e-36 156.0 295 38.3
GSVIVG01031653001 Vitis vinifera HOM05D010496 ORTHO05D010879 2.1e-20 104.0 321 29.9
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 4.0e-19 99.8 295 29.2
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 1.5e-18 97.8 269 30.1
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 2.0e-18 97.4 294 27.9
MD04G1026500 Malus domestica HOM05D010496 ORTHO05D010879 6.3e-17 92.4 289 29.1
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 2.4e-16 90.5 259 28.6
Haze_11711 Corylus avellana HOM05D010496 ORTHO05D010879 7.0e-16 89.0 258 28.3
Gohir.A09G209500 Gossypium hirsutum HOM05D010496 ORTHO05D010879 1.6e-15 87.8 226 30.5
Gorai.006G226800 Gossypium raimondii HOM05D010496 ORTHO05D010879 3.5e-15 86.7 226 29.6
Gohir.D09G202900 Gossypium hirsutum HOM05D010496 ORTHO05D010879 1.0e-14 85.1 226 29.6
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 1.0e-14 85.1 208 33.2
PSO675G9246 Papaver somniferum HOM05D061670 ORTHO05D010879 1.7e-14 84.3 115 40.9
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 2.2e-14 84.0 234 29.5
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 3.8e-14 83.2 297 29.6
Duzib151G0883 Durio zibethinus HOM05D010496 ORTHO05D010879 5.0e-14 82.8 253 31.6
Glyma.10G293200 Glycine max HOM05D011141 ORTHO05D010879 5.0e-14 82.8 196 33.2
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 6.5e-14 82.4 115 40.0
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.9e-13 80.9 238 26.9
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 2.5e-13 80.5 205 30.2
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 2.5e-13 80.5 214 29.0
Glyma.20G243300 Glycine max HOM05D011141 ORTHO05D010879 4.2e-13 79.7 193 28.5
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 5.5e-13 79.3 192 30.7
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 7.2e-13 79.0 296 26.0
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 7.2e-13 79.0 221 30.3
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 9.4e-13 78.6 296 25.3
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.2e-12 78.2 284 26.4
Thecc.04G186900 Theobroma cacao HOM05D010496 ORTHO05D010879 1.6e-12 77.8 211 29.9
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.1e-12 77.4 230 28.3
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 2.1e-12 77.4 242 29.3
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 2.7e-12 77.0 208 31.2
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 2.7e-12 77.0 296 25.0
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.7e-12 77.0 296 25.0
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 3.6e-12 76.6 208 31.2
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 3.6e-12 76.6 241 29.0
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 4.7e-12 76.3 270 27.0
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 4.7e-12 76.3 275 27.3
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 6.1e-12 75.9 298 27.5
Glyma.10G293000 Glycine max HOM05D011141 ORTHO05D010879 6.1e-12 75.9 196 28.1
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.0e-11 75.1 266 27.1
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.0e-11 75.1 272 26.5
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 1.0e-11 75.1 280 25.7
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 1.0e-11 75.1 235 27.2
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.4e-11 74.7 193 32.6
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.4e-11 74.7 293 24.9
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 1.4e-11 74.7 209 32.1
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 1.8e-11 74.3 223 29.1
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.8e-11 74.3 239 29.7
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.8e-11 74.3 239 29.7
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 1.8e-11 74.3 290 24.8
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 2.3e-11 73.9 352 27.8
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.3e-11 73.9 302 26.5
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.3e-11 73.9 262 28.2
VMungo0720G3183 Vigna mungo HOM05D011141 ORTHO05D010879 2.3e-11 73.9 218 29.4
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 3.0e-11 73.6 267 27.7
FvH4_4g12430 Fragaria vesca HOM05D010496 ORTHO05D010879 3.0e-11 73.6 222 27.5
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 3.0e-11 73.6 213 27.7
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 3.0e-11 73.6 198 30.8
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 4.0e-11 73.2 206 30.1
RcHm_v2.0_Chr4g0410661 Rosa chinensis HOM05D010496 ORTHO05D010879 4.0e-11 73.2 304 25.3
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 6.8e-11 72.4 266 28.9
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 8.8e-11 72.0 270 27.8
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 8.8e-11 72.0 270 27.8
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 8.8e-11 72.0 270 27.8
FAN22G0913 Fragaria x ananassa HOM05D010496 ORTHO05D010879 8.8e-11 72.0 304 26.6
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 8.8e-11 72.0 213 30.0
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 1.2e-10 71.6 272 26.1
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 1.2e-10 71.6 270 26.3
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 1.2e-10 71.6 273 27.8
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.5e-10 71.2 273 26.7
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 1.5e-10 71.2 289 27.0
VMungo0720G1878 Vigna mungo HOM05D011141 ORTHO05D010879 1.5e-10 71.2 209 29.2
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.0e-10 70.9 250 28.0
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 2.0e-10 70.9 268 28.4
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 2.0e-10 70.9 102 37.3
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 2.6e-10 70.5 266 27.8
FAN12G2147 Fragaria x ananassa HOM05D010496 ORTHO05D010879 2.6e-10 70.5 300 26.3
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 2.6e-10 70.5 218 28.0
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 2.6e-10 70.5 279 25.8
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 2.6e-10 70.5 273 29.3
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 3.4e-10 70.1 245 27.3
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 3.4e-10 70.1 209 30.1
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.4e-10 70.1 275 26.5
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 4.4e-10 69.7 233 26.6
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 4.4e-10 69.7 238 27.7
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 4.4e-10 69.7 266 28.9
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 4.4e-10 69.7 224 28.6
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.4e-10 69.7 218 28.0
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 5.7e-10 69.3 238 25.6
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 5.7e-10 69.3 286 25.9
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 5.7e-10 69.3 286 25.9
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 5.7e-10 69.3 286 25.9
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 5.7e-10 69.3 206 29.6
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 5.7e-10 69.3 295 25.1
FAN07G2091 Fragaria x ananassa HOM05D010496 ORTHO05D010879 5.7e-10 69.3 222 27.0
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 5.7e-10 69.3 330 25.2
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 5.7e-10 69.3 254 26.8
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 7.5e-10 68.9 314 25.2
arahy.Tifrunner.gnm1.ann1.R8V4SK Arachis hypogaea HOM05D011141 ORTHO05D010879 7.5e-10 68.9 234 26.9
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 7.5e-10 68.9 233 27.5
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 7.5e-10 68.9 225 28.9
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 7.5e-10 68.9 313 25.6
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 7.5e-10 68.9 306 24.2
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 7.5e-10 68.9 273 28.2
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 9.8e-10 68.6 244 29.1
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 9.8e-10 68.6 273 27.1
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 9.8e-10 68.6 230 30.0
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 9.8e-10 68.6 262 27.1
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 9.8e-10 68.6 273 27.1
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 9.8e-10 68.6 292 27.7
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 1.3e-09 68.2 219 29.7
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 1.3e-09 68.2 71 45.1
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 1.7e-09 67.8 209 29.7
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.7e-09 67.8 255 24.7
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 1.7e-09 67.8 280 26.8
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 2.2e-09 67.4 218 29.4
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 2.2e-09 67.4 82 42.7
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 2.2e-09 67.4 289 28.0
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.2e-09 67.4 212 29.2
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.2e-09 67.4 43 62.8
AUR62018491 Chenopodium quinoa HOM05D007934 ORTHO05D010879 2.2e-09 67.4 266 25.2
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.2e-09 67.4 337 25.5
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.2e-09 67.4 297 25.6
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.2e-09 67.4 273 26.0
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 2.2e-09 67.4 306 28.1
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 2.8e-09 67.0 56 51.8
AUR62026200 Chenopodium quinoa HOM05D007934 ORTHO05D010067 2.8e-09 67.0 269 25.3
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.8e-09 67.0 274 26.3
arahy.Tifrunner.gnm1.ann1.P32IB9 Arachis hypogaea HOM05D011141 ORTHO05D010879 4.8e-09 66.2 215 28.8
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 4.8e-09 66.2 295 27.5
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 4.8e-09 66.2 42 64.3
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 6.3e-09 65.9 291 24.1
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 6.3e-09 65.9 234 27.4
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 8.3e-09 65.5 73 46.6
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.4e-08 64.7 53 54.7
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.4e-08 64.7 71 43.7
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.4e-08 64.7 225 28.4
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 1.4e-08 64.7 292 26.0
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 1.4e-08 64.7 291 26.1
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.4e-08 64.7 42 61.9
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 1.4e-08 64.7 41 63.4
EL10Ac3g07401 Beta vulgaris HOM05D010496 ORTHO05D010879 1.8e-08 64.3 45 53.3
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.8e-08 64.3 236 28.0
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 2.4e-08 63.9 304 25.3
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 2.4e-08 63.9 53 50.9
VMungo0720G2993 Vigna mungo HOM05D011141 ORTHO05D010879 2.4e-08 63.9 96 38.5
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.1e-08 63.5 238 28.2
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.1e-08 63.5 123 34.1
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 4.1e-08 63.2 225 28.0
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 4.1e-08 63.2 239 28.9
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 4.1e-08 63.2 121 32.2
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 5.4e-08 62.8 387 23.3
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 5.4e-08 62.8 126 33.3
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 5.4e-08 62.8 276 27.9
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 5.4e-08 62.8 311 22.8
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 7.0e-08 62.4 248 28.2
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 7.0e-08 62.4 306 24.5
Glyma.20G243200 Glycine max HOM05D011141 ORTHO05D010879 9.1e-08 62.0 201 26.9
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 9.1e-08 62.0 226 25.2
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.2e-07 61.6 42 57.1
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.0e-07 60.8 224 26.8
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.0e-07 60.8 224 26.8
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 2.0e-07 60.8 248 27.8
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 2.0e-07 60.8 248 27.8
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 2.0e-07 60.8 262 26.0
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.0e-07 60.8 337 26.1
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 3.5e-07 60.1 208 27.9
Phvul.007G006900 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 4.5e-07 59.7 95 38.9
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 5.9e-07 59.3 230 27.8
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 1.0e-06 58.5 272 25.0
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 1.0e-06 58.5 336 24.7
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-06 58.2 264 26.1
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 1.3e-06 58.2 113 32.7
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 1.7e-06 57.8 271 25.1
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 1.7e-06 57.8 271 25.1
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 1.7e-06 57.8 225 26.7
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 1.7e-06 57.8 312 23.4
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 2.9e-06 57.0 246 25.2
Phvul.007G006800 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 5.0e-06 56.2 181 26.5
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 6.5e-06 55.8 216 26.9
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 8.6e-06 55.5 225 26.2


User provided reference genes

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