Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 0.0e+00 1080.5 561 100.0
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 3.8e-209 731.9 562 69.9
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 3.2e-208 728.8 564 68.6
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 1.9e-192 676.4 566 65.4
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 5.5e-192 674.9 565 65.7
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 2.7e-191 672.5 563 65.2
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 6.7e-190 667.9 564 65.6
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 1.9e-189 666.4 565 65.5
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 1.2e-186 657.1 562 65.5
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 1.3e-185 653.7 560 63.4
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 1.1e-184 650.6 566 64.0
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 5.5e-184 648.3 562 64.1
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 1.2e-183 647.1 575 63.1
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 2.3e-182 642.9 567 61.7
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 7.4e-181 637.9 565 62.8
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 1.3e-180 637.1 563 63.4
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 8.2e-180 634.4 571 62.9
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 3.1e-179 632.5 562 63.3
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.2e-178 630.6 566 62.4
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 5.9e-178 628.2 565 61.8
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.0e-177 627.5 566 61.3
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 8.5e-177 624.4 566 61.7
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 1.9e-176 623.2 564 62.1
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 2.5e-176 622.9 566 59.9
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.2e-176 622.5 566 59.7
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 3.2e-176 622.5 562 62.6
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 9.4e-176 620.9 572 60.8
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 1.6e-175 620.2 572 62.2
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 2.7e-175 619.4 563 60.2
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 6.1e-175 618.2 566 62.2
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 7.9e-175 617.8 568 61.1
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 7.9e-175 617.8 561 61.9
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.3e-174 616.3 567 60.3
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 3.9e-174 615.5 560 60.4
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.3e-172 610.5 564 61.9
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.8e-172 609.4 566 59.4
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 5.3e-171 605.1 563 60.6
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 7.0e-171 604.7 572 60.1
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.0e-169 600.9 572 59.4
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 2.2e-169 599.7 572 59.4
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 8.5e-169 597.8 563 58.8
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 1.6e-167 593.6 561 57.2
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 6.1e-167 591.7 572 60.3
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.4e-166 590.5 529 62.4
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 4.0e-166 589.0 564 59.4
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 2.2e-164 583.2 546 61.4
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 2.8e-164 582.8 570 58.9
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.4e-163 580.5 563 58.1
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 1.8e-163 580.1 649 54.5
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 7.0e-163 578.2 565 57.7
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 1.6e-162 577.0 566 60.2
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.7e-162 576.2 582 56.2
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 3.5e-162 575.9 566 58.7
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 4.5e-162 575.5 601 54.2
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 4.5e-162 575.5 563 57.5
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.7e-161 573.5 588 55.4
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.9e-161 572.8 565 57.3
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 5.0e-161 572.0 588 55.4
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 8.5e-161 571.2 570 59.1
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 7.2e-160 568.2 569 57.1
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 1.2e-159 567.4 570 58.6
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 1.2e-159 567.4 562 57.7
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 2.1e-159 566.6 552 57.8
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 2.1e-159 566.6 616 53.4
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 4.7e-159 565.5 552 59.4
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 8.0e-159 564.7 568 55.5
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 8.0e-159 564.7 566 58.7
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 5.2e-158 562.0 566 58.0
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 6.8e-158 561.6 567 57.7
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 2.0e-157 560.1 576 58.3
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 4.8e-156 555.4 574 57.1
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 8.3e-156 554.7 561 58.1
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 1.8e-155 553.5 566 57.8
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 2.7e-154 549.7 623 55.1
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 8.5e-153 544.7 596 53.0
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 3.2e-152 542.7 576 57.8
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 3.7e-148 529.3 481 61.5
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 8.3e-148 528.1 563 56.5
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.4e-147 527.3 576 54.7
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 5.4e-147 525.4 583 53.5
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 9.2e-147 524.6 580 54.5
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 2.7e-146 523.1 581 54.4
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 5.9e-146 521.9 581 54.2
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 2.9e-145 519.6 435 66.7
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 2.5e-144 516.5 589 54.7
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 7.3e-144 515.0 537 57.0
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 9.5e-144 514.6 580 54.1
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 4.7e-143 512.3 571 55.9
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 2.3e-142 510.0 572 53.1
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.0e-142 509.6 703 46.1
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.5e-141 507.3 584 53.4
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 2.6e-141 506.5 575 53.4
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.4e-141 506.1 702 46.3
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 9.8e-141 504.6 575 52.7
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.7e-140 503.8 649 48.1
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 8.3e-140 501.5 572 52.1
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 5.9e-138 495.4 480 56.7
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 1.3e-137 494.2 465 60.4
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.5e-136 490.7 579 54.2
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 1.5e-133 480.7 576 51.9
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 1.5e-133 480.7 576 51.9
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 4.4e-133 479.2 535 53.8
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 1.3e-132 477.6 576 51.7
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 4.9e-132 475.7 572 50.9
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 4.6e-130 469.2 568 49.3
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 2.3e-129 466.8 575 50.6
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 3.9e-129 466.1 565 51.5
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 6.6e-129 465.3 575 50.4
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 4.3e-128 462.6 564 52.1
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 7.3e-128 461.8 558 51.4
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.1e-119 433.7 556 48.2
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 1.5e-117 427.6 581 45.6
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 4.1e-115 419.5 391 61.1
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 4.9e-108 396.0 424 55.9
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 7.1e-99 365.5 572 43.4
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 9.3e-99 365.2 569 42.9
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 6.9e-86 322.4 404 48.3
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.4e-75 288.1 317 52.1
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 6.3e-71 272.7 333 50.8
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 7.2e-59 232.6 501 36.1
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 3.1e-54 217.2 261 44.8
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 2.6e-40 171.0 442 33.7
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 6.8e-25 119.8 152 53.9
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 7.5e-24 116.3 85 68.2
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 1.7e-20 105.1 86 62.8
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 3.3e-19 100.9 201 32.3
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 5.6e-19 100.1 171 33.3
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 8.0e-18 96.3 84 60.7
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.1e-17 94.4 109 52.3
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 8.9e-17 92.8 67 70.1
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.2e-16 92.4 207 32.4
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 3.7e-15 87.4 196 34.2
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 8.3e-15 86.3 218 31.2
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 2.0e-08 65.1 59 59.3
TAR633G2245 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.3e-07 62.4 104 45.2


User provided reference genes

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