Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 2010.3 1044 100.0
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1360.9 1017 70.5
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1295.4 1034 66.4
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1285.4 1038 66.5
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1281.5 1038 66.3
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1269.2 1039 64.6
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1268.1 1044 64.3
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1252.7 1040 63.7
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1249.6 1007 64.4
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1229.5 1041 62.2
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1229.2 1150 59.5
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1213.4 1044 62.0
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1212.6 1039 61.5
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1205.7 1042 60.9
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1204.1 1051 60.6
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1204.1 1023 62.6
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1200.7 1029 61.2
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1199.5 1058 61.2
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1196.4 1039 62.1
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1195.6 1031 61.4
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1195.3 1023 62.5
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1190.6 1040 62.0
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1189.1 986 62.8
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1183.3 1025 61.5
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1175.6 962 64.6
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1175.6 982 62.6
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1174.1 1045 60.1
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1165.2 1051 58.8
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1164.4 1030 59.9
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1157.9 1020 60.2
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1157.5 1036 59.6
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1147.9 1038 59.2
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1146.7 1031 60.1
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 0.0e+00 1140.9 1039 58.2
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1139.8 979 59.4
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1137.5 1036 59.2
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1135.9 1010 58.1
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1134.4 1036 58.3
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1133.6 1024 59.1
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1132.9 1041 59.0
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1132.5 1010 57.9
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1131.7 1006 58.2
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1131.7 1022 58.1
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 0.0e+00 1130.5 935 61.9
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1128.6 1043 57.5
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1123.2 1024 58.4
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 0.0e+00 1122.8 1040 58.5
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1120.1 1037 59.3
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1118.2 1009 60.1
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1118.2 1040 57.4
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1117.4 1052 57.0
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 0.0e+00 1115.5 1044 57.6
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 0.0e+00 1113.6 1038 57.6
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 0.0e+00 1112.1 1061 57.4
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 0.0e+00 1110.1 1060 57.0
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 0.0e+00 1106.3 1021 57.2
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 0.0e+00 1106.3 1020 57.3
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 0.0e+00 1105.9 1021 57.4
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 0.0e+00 1105.5 1042 56.0
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1102.8 1037 59.0
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 0.0e+00 1102.0 1015 57.2
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1100.5 1045 56.2
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1094.3 1052 55.9
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 0.0e+00 1092.8 1040 57.8
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 0.0e+00 1090.9 1031 57.3
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 0.0e+00 1087.8 1052 55.8
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1077.8 1066 54.5
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 0.0e+00 1076.2 1047 55.0
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 6.4e-311 1070.8 1049 55.8
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 1.2e-309 1066.6 1035 54.8
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 8.6e-308 1060.4 1052 53.9
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 1.5e-307 1059.7 1056 54.9
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 1.4e-305 1053.1 1050 53.8
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 1.4e-305 1053.1 1177 51.9
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 2.3e-305 1052.4 1061 54.0
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 3.1e-305 1052.0 1022 55.6
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 4.0e-305 1051.6 1048 55.8
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 1.2e-304 1050.0 1043 54.2
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 1.2e-304 1050.0 1043 54.2
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 5.4e-302 1041.2 1053 53.2
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 1.0e-300 1036.9 1056 53.3
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 3.9e-300 1035.0 1056 53.2
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 2.1e-298 1029.2 1076 52.4
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 1.1e-297 1026.9 1046 53.2
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 1.2e-293 1013.4 1070 54.4
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 6.2e-290 1001.1 843 60.9
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 4.0e-273 945.3 934 54.2
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 8.2e-266 921.0 743 62.9
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 1.1e-262 910.6 748 62.3
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 2.5e-262 909.4 1048 50.1
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 3.2e-262 909.1 748 62.3
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 5.1e-260 901.7 777 60.1
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 4.1e-257 892.1 749 60.5
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 1.4e-254 883.6 746 61.1
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 1.2e-237 827.4 1036 47.1
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 8.0e-229 798.1 631 63.7
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 1.7e-215 753.8 555 69.4
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 8.0e-213 745.0 989 44.4
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 2.2e-202 710.3 666 56.6
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 9.8e-195 684.9 560 60.5
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 1.7e-191 674.1 1052 39.4
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 6.2e-189 665.6 614 58.6
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 8.9e-188 661.8 713 51.2
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 4.6e-176 622.9 900 41.6
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 5.4e-169 599.4 926 38.6
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 2.0e-155 554.3 991 37.6
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.5e-152 543.5 428 62.9
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 5.9e-147 526.2 670 47.5
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.8e-95 355.1 317 57.4
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 2.5e-89 334.7 797 35.5
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 6.2e-88 330.1 400 48.8
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.1e-83 315.1 249 65.9
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 4.6e-83 313.9 355 47.9
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 7.5e-78 296.6 232 65.5
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 8.6e-74 283.1 265 55.1
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-73 280.0 1601 21.2
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.7e-69 268.9 206 67.0
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 1.1e-63 249.6 229 53.3
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 9.9e-62 243.0 974 26.5
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 6.4e-61 240.4 244 56.1
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 1.2e-59 236.1 1041 24.3
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 7.8e-59 233.4 305 44.6
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 1.9e-49 202.2 250 48.8
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 8.1e-48 196.8 280 48.9
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 4.2e-36 157.9 133 63.2
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 3.3e-33 148.3 105 70.5
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 9.1e-23 113.6 64 78.1
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 5.9e-22 110.9 86 67.4
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 9.4e-20 103.6 68 73.5
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 2.1e-19 102.4 68 72.1
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.4e-15 89.7 70 61.4
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 4.2e-12 78.2 82 57.3
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 5.5e-12 77.8 69 56.5
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 3.0e-10 72.0 52 65.4
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 4.4e-09 68.2 46 69.6
Sabra17G0109200 Salix brachista HOM05D005365 ORTHO05D349400 4.1e-07 61.6 346 23.7
SEGI_22187 Sequoiadendron giganteum HOM05D005365 ORTHO05D000227 2.0e-06 59.3 44 59.1


User provided reference genes

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