Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 6.2e-37 157.1 90 100.0
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 5.4e-17 90.9 69 81.2
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 1.2e-16 89.7 63 82.5
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 3.9e-15 84.7 69 76.8
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 1.1e-14 83.2 68 75.0
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 1.5e-14 82.8 64 79.7
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 1.5e-14 82.8 69 73.9
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 2.5e-14 82.0 69 72.5
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.5e-14 82.0 69 73.9
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 4.3e-14 81.3 70 75.7
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 9.6e-14 80.1 55 87.3
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 2.1e-13 79.0 69 75.4
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 2.8e-13 78.6 70 74.3
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 2.8e-13 78.6 70 74.3
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 4.7e-13 77.8 67 73.1
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 4.7e-13 77.8 72 70.8
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 6.2e-13 77.4 60 78.3
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 6.2e-13 77.4 72 70.8
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 8.1e-13 77.0 63 73.0
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 1.1e-12 76.6 61 75.4
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 1.4e-12 76.3 68 69.1
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 1.4e-12 76.3 68 70.6
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 1.8e-12 75.9 68 67.6
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 3.1e-12 75.1 59 79.7
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 9.0e-12 73.6 68 72.1
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 1.2e-11 73.2 57 77.2
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 1.2e-11 73.2 57 77.2
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 1.5e-11 72.8 67 71.6
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 1.5e-11 72.8 63 69.8
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 1.5e-11 72.8 63 76.2
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 2.0e-11 72.4 58 81.0
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.0e-11 72.4 62 71.0
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 2.6e-11 72.0 62 74.2
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 2.6e-11 72.0 49 83.7
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 3.4e-11 71.6 67 68.7
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 3.4e-11 71.6 58 77.6
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 3.4e-11 71.6 66 71.2
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 5.8e-11 70.9 65 69.2
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 5.8e-11 70.9 65 69.2
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 5.8e-11 70.9 68 61.8
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 7.6e-11 70.5 55 76.4
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 7.6e-11 70.5 66 71.2
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 7.6e-11 70.5 70 64.3
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 7.6e-11 70.5 57 71.9
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 7.6e-11 70.5 68 69.1
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 7.6e-11 70.5 59 69.5
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 1.3e-10 69.7 68 69.1
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.3e-10 69.7 66 69.7
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 2.2e-10 68.9 47 85.1
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 2.2e-10 68.9 47 85.1
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 2.2e-10 68.9 47 85.1
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 2.9e-10 68.6 48 81.2
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 2.9e-10 68.6 48 81.2
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 2.9e-10 68.6 47 83.0
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 2.9e-10 68.6 66 68.2
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 2.9e-10 68.6 55 74.5
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.9e-10 68.6 56 71.4
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 4.9e-10 67.8 48 79.2
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 4.9e-10 67.8 55 72.7
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 6.4e-10 67.4 55 72.7
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 6.4e-10 67.4 56 76.8
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 8.4e-10 67.0 47 80.9
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 8.4e-10 67.0 59 76.3
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 8.4e-10 67.0 47 80.9
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 8.4e-10 67.0 63 65.1
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 1.1e-09 66.6 61 67.2
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.1e-09 66.6 61 67.2
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 1.4e-09 66.2 62 72.6
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.4e-09 66.2 54 72.2
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.4e-09 66.2 54 72.2
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 1.4e-09 66.2 68 63.2
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 1.9e-09 65.9 48 77.1
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.9e-09 65.9 46 82.6
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 2.4e-09 65.5 47 78.7
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 3.2e-09 65.1 44 86.4
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 3.2e-09 65.1 49 75.5
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 4.2e-09 64.7 48 77.1
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 4.2e-09 64.7 59 71.2
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 4.2e-09 64.7 62 71.0
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 5.4e-09 64.3 46 82.6
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 7.1e-09 63.9 59 67.8
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 7.1e-09 63.9 44 84.1
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 7.1e-09 63.9 47 78.7
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 9.3e-09 63.5 68 64.7
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 9.3e-09 63.5 59 69.5
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 9.3e-09 63.5 68 64.7
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 9.3e-09 63.5 56 66.1
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 9.3e-09 63.5 65 64.6
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.6e-08 62.8 69 66.7
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 2.7e-08 62.0 42 85.7
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 2.7e-08 62.0 67 64.2
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 3.5e-08 61.6 42 85.7
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 3.5e-08 61.6 75 56.0
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 3.5e-08 61.6 56 69.6
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 4.6e-08 61.2 49 77.6
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 4.6e-08 61.2 70 60.0
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 4.6e-08 61.2 70 60.0
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 6.0e-08 60.8 48 72.9
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 6.0e-08 60.8 62 62.9
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 1.7e-07 59.3 50 72.0
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 2.3e-07 58.9 69 58.0
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 3.0e-07 58.5 47 76.6
Migut.N00389 Erythranthe guttata HOM05D005458 ORTHO05D005672 3.0e-07 58.5 44 81.8
TAR633G2004 Trochodendron aralioides HOM05D005458 ORTHO05D005672 3.0e-07 58.5 45 80.0
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 3.9e-07 58.2 66 65.2
THA.LOC104804811 Tarenaya hassleriana HOM05D005458 ORTHO05D005672 6.6e-07 57.4 69 58.0
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 8.7e-07 57.0 46 76.1
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 8.7e-07 57.0 69 62.3
Hma1.2p1_0187F.1_g082170 Hydrangea macrophylla HOM05D005458 ORTHO05D005672 8.7e-07 57.0 46 78.3
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 8.7e-07 57.0 70 58.6
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 1.1e-06 56.6 45 75.6
C08p07830 Brassica napus HOM05D005458 ORTHO05D005672 1.1e-06 56.6 40 82.5
BolC8t47637H Brassica oleracea HOM05D005458 ORTHO05D005672 1.1e-06 56.6 40 82.5
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.1e-06 56.6 70 61.4
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 1.5e-06 56.2 40 85.0
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 1.9e-06 55.8 61 60.7
BcaC07g37341 Brassica carinata HOM05D005458 ORTHO05D005672 3.3e-06 55.1 39 82.1
Haze_11612 Corylus avellana HOM05D005458 ORTHO05D005672 3.3e-06 55.1 46 78.3
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 3.3e-06 55.1 63 61.9
CSS0011663 Camellia sinensis var. sinensis HOM05D005458 ORTHO05D005672 4.3e-06 54.7 45 80.0
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 5.6e-06 54.3 64 59.4
MD05G1174200 Malus domestica HOM05D005458 ORTHO05D005672 5.6e-06 54.3 62 61.3
Cre06.g278238 Chlamydomonas reinhardtii HOM05D005458 ORTHO05D005672 7.3e-06 53.9 53 66.0
Sed0009755 Sechium edule HOM05D005458 ORTHO05D005672 9.6e-06 53.5 53 64.2


User provided reference genes

Program Settings