Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.0e-67 258.8 122 100.0
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 1.9e-28 129.4 121 55.4
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.6e-27 126.3 118 55.1
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 7.8e-27 124.0 121 52.1
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 1.3e-26 123.2 121 51.2
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 1.7e-26 122.9 122 47.5
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.3e-26 122.5 122 53.3
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 1.5e-25 119.8 122 49.2
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 5.6e-25 117.9 121 47.1
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 7.3e-25 117.5 121 47.1
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.6e-24 116.3 121 52.1
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 2.1e-24 115.9 121 49.6
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 4.8e-24 114.8 121 48.8
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 4.8e-24 114.8 119 49.6
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 6.2e-24 114.4 121 46.3
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 6.9e-23 110.9 125 44.8
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 6.9e-23 110.9 121 47.9
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 9.0e-23 110.5 120 47.5
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 9.0e-23 110.5 120 47.5
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.5e-22 109.8 121 44.6
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.5e-22 109.8 121 45.5
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 2.6e-22 109.0 118 46.6
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 5.8e-22 107.8 120 46.7
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 5.8e-22 107.8 120 46.7
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.7e-21 106.3 115 46.1
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 2.2e-21 105.9 120 46.7
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 2.2e-21 105.9 120 46.7
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 3.8e-21 105.1 102 48.0
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 3.8e-21 105.1 102 48.0
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 6.4e-21 104.4 119 44.5
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 8.4e-21 104.0 119 47.1
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 1.4e-20 103.2 117 42.7
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 1.9e-20 102.8 119 44.5
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.9e-20 102.8 102 47.1
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 4.2e-20 101.7 116 46.6
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.4e-20 101.3 102 47.1
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 5.4e-20 101.3 105 46.7
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 7.1e-20 100.9 117 42.7
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 9.3e-20 100.5 119 41.2
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 1.2e-19 100.1 119 40.3
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 1.6e-19 99.8 122 41.8
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 2.1e-19 99.4 109 44.0
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 2.1e-19 99.4 119 45.4
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 2.7e-19 99.0 119 43.7
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 2.7e-19 99.0 106 44.3
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 3.5e-19 98.6 118 42.4
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 3.5e-19 98.6 117 39.3
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 6.0e-19 97.8 120 40.0
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 6.0e-19 97.8 119 42.9
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 7.9e-19 97.4 117 43.6
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 7.9e-19 97.4 117 43.6
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 7.9e-19 97.4 118 44.1
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 7.9e-19 97.4 118 43.2
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 1.0e-18 97.1 118 39.8
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 1.0e-18 97.1 119 47.1
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 1.3e-18 96.7 119 39.5
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 1.3e-18 96.7 131 41.2
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 1.7e-18 96.3 105 44.8
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.3e-18 95.9 119 39.5
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 5.1e-18 94.7 98 45.9
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 5.1e-18 94.7 117 40.2
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 8.7e-18 94.0 110 42.7
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 8.7e-18 94.0 121 41.3
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 1.5e-17 93.2 119 47.1
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 1.5e-17 93.2 119 45.4
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 1.9e-17 92.8 106 43.4
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 3.3e-17 92.0 119 45.4
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 3.3e-17 92.0 119 38.7
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 3.3e-17 92.0 122 38.5
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 4.3e-17 91.7 119 44.5
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 5.6e-17 91.3 116 45.7
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 7.3e-17 90.9 93 48.4
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 9.6e-17 90.5 104 39.4
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 1.3e-16 90.1 121 38.8
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 1.3e-16 90.1 119 42.0
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.6e-16 89.7 120 43.3
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 2.1e-16 89.4 97 47.4
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 2.8e-16 89.0 119 37.0
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.6e-16 88.6 109 41.3
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 3.6e-16 88.6 119 37.8
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 6.2e-16 87.8 117 41.9
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 6.2e-16 87.8 121 39.7
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 8.1e-16 87.4 103 41.7
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 8.1e-16 87.4 119 44.5
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.1e-15 87.0 97 49.5
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 1.1e-15 87.0 98 45.9
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 1.4e-15 86.7 120 43.3
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 1.4e-15 86.7 108 40.7
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.8e-15 86.3 111 41.4
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.4e-15 85.9 105 41.0
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 3.1e-15 85.5 108 39.8
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.1e-15 85.5 120 42.5
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 4.0e-15 85.1 120 40.8
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 4.0e-15 85.1 122 38.5
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.3e-15 84.7 109 39.4
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 5.3e-15 84.7 119 39.5
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 6.9e-15 84.3 97 46.4
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 9.0e-15 84.0 98 45.9
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 2.0e-14 82.8 126 40.5
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 2.6e-14 82.4 87 43.7
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.4e-14 82.0 98 40.8
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 1.3e-13 80.1 111 41.4
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 2.9e-13 79.0 124 36.3
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 4.9e-13 78.2 99 38.4
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 1.1e-12 77.0 85 43.5
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.1e-12 77.0 114 37.7
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.1e-12 77.0 114 37.7
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 1.1e-12 77.0 123 39.8
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 1.4e-12 76.6 90 45.6
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 1.4e-12 76.6 103 39.8
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 4.2e-12 75.1 79 48.1
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 4.2e-12 75.1 95 41.1
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 5.4e-12 74.7 95 46.3
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 7.1e-12 74.3 100 41.0
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 9.3e-12 73.9 122 39.3
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 1.2e-11 73.6 108 36.1
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 1.2e-11 73.6 124 37.1
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 2.7e-11 72.4 118 35.6
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 6.0e-11 71.2 107 38.3
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 1.0e-10 70.5 83 43.4
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.3e-10 70.1 113 37.2
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 2.3e-10 69.3 120 33.3
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.3e-10 69.3 113 37.2
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 6.7e-10 67.8 123 34.1
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.1e-09 67.0 95 36.8
Aqoxy5G02746 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 1.5e-09 66.6 63 52.4
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 1.3e-08 63.5 89 39.3
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.6e-08 63.2 80 42.5
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.6e-08 63.2 80 41.2
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.8e-08 62.4 95 36.8
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 2.8e-08 62.4 95 36.8
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 3.7e-08 62.0 95 36.8
Solyc01g060370.2 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.1e-07 60.5 58 48.3
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 9.0e-07 57.4 46 54.3
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 2.0e-06 56.2 66 40.9
Manes.13G130950 Manihot esculenta HOM05D000395 ORTHO05D000088 5.8e-06 54.7 56 46.4
SEGI_02922 Sequoiadendron giganteum HOM05D000823 ORTHO05D005846 7.6e-06 54.3 73 39.7
Gorai.004G260200 Gossypium raimondii HOM05D000395 ORTHO05D000088 1.0e-05 53.9 65 46.2


User provided reference genes

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