Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.8e-157 559.3 300 100.0
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.2e-137 493.4 275 94.5
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 4.1e-53 212.6 300 52.3
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 3.3e-50 203.0 279 51.6
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 3.1e-48 196.4 252 51.6
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 3.1e-48 196.4 267 50.6
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 3.1e-48 196.4 266 50.0
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 4.4e-47 192.6 255 52.9
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 1.7e-46 190.7 234 50.9
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.7e-46 190.7 256 50.4
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.2e-46 190.3 227 53.3
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.7e-46 189.5 256 50.4
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 6.4e-46 188.7 229 53.3
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 6.4e-46 188.7 278 46.8
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 6.4e-46 188.7 246 51.2
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 6.4e-46 188.7 266 49.2
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 8.3e-46 188.3 237 53.2
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 8.3e-46 188.3 213 55.4
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 8.3e-46 188.3 213 55.4
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.1e-45 188.0 207 57.0
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.1e-45 188.0 250 50.0
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.1e-45 188.0 208 58.7
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.4e-45 187.6 230 52.6
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 2.4e-45 186.8 243 52.3
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 4.1e-45 186.0 237 51.5
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 7.0e-45 185.3 243 51.4
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.2e-44 184.5 239 52.3
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.5e-44 183.0 287 46.7
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 3.0e-43 179.9 231 52.8
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.1e-42 177.9 212 52.8
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 1.5e-42 177.6 237 49.8
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.5e-42 176.8 255 49.4
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.2e-41 174.5 203 55.7
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.2e-41 174.5 201 55.7
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.1e-41 173.7 279 45.5
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 2.8e-41 173.3 287 45.3
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.6e-41 172.9 203 55.2
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.6e-41 172.9 203 55.2
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 4.7e-41 172.6 203 55.2
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.8e-40 170.6 231 51.9
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.0e-39 167.2 226 49.1
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 5.8e-39 165.6 226 49.1
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 7.5e-39 165.2 229 50.7
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.3e-38 164.5 282 41.5
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 1.3e-38 164.5 198 55.6
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.7e-38 164.1 245 46.5
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 3.7e-38 162.9 287 45.6
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 4.9e-38 162.5 297 42.1
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 6.4e-38 162.2 209 53.1
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 3.2e-37 159.8 238 47.9
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 5.4e-37 159.1 246 48.4
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 7.1e-37 158.7 258 46.1
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 9.2e-37 158.3 237 47.3
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.2e-36 157.9 262 45.8
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 2.1e-36 157.1 245 45.7
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 3.5e-36 156.4 205 51.2
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 4.6e-36 156.0 222 48.2
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 7.8e-36 155.2 264 41.7
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.0e-35 153.3 196 52.6
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 3.9e-35 152.9 257 45.1
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 3.9e-35 152.9 249 45.0
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 2.5e-34 150.2 230 45.7
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 4.3e-34 149.4 203 47.8
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 4.3e-34 149.4 281 42.3
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 6.2e-33 145.6 208 45.2
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.1e-32 144.8 183 54.1
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.1e-32 144.8 252 43.3
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.4e-32 144.4 238 45.0
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.8e-32 144.1 277 41.9
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.8e-32 144.1 208 47.1
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 6.8e-32 142.1 304 38.8
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 6.8e-32 142.1 271 40.6
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 8.9e-32 141.7 207 45.9
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 8.9e-32 141.7 234 44.0
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.9e-32 141.7 226 46.5
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.2e-31 141.4 201 49.3
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.2e-31 141.4 213 46.5
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.0e-31 140.6 284 38.4
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.6e-31 140.2 271 40.6
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.6e-31 140.2 198 48.0
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 3.4e-31 139.8 280 39.3
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 5.8e-31 139.0 283 41.3
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.3e-30 137.9 231 41.6
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 2.2e-30 137.1 247 43.3
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.9e-30 136.7 242 43.4
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 2.9e-30 136.7 261 41.0
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 6.4e-30 135.6 252 41.3
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 2.4e-29 133.7 256 39.8
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 4.1e-29 132.9 300 38.0
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 5.4e-29 132.5 264 40.9
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 5.4e-29 132.5 178 52.2
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 7.1e-29 132.1 249 41.4
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 3.5e-28 129.8 226 47.8
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 3.5e-28 129.8 270 37.4
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.3e-27 127.9 190 46.3
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.3e-27 127.9 204 44.6
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 6.6e-27 125.6 210 46.7
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.3e-26 123.2 278 37.8
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 9.6e-26 121.7 174 48.9
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 1.6e-25 120.9 224 41.1
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.4e-24 117.1 278 36.7
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 3.1e-24 116.7 238 38.2
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 5.2e-24 115.9 193 47.2
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 7.6e-23 112.1 222 41.9
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.2e-22 110.5 246 37.0
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.9e-22 110.2 251 36.7
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 2.9e-22 110.2 200 43.0
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 3.8e-22 109.8 248 36.7
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 3.8e-22 109.8 248 36.7
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.8e-22 109.8 202 40.1
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.1e-21 108.2 249 36.9
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.2e-21 106.7 292 33.2
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 3.2e-21 106.7 193 45.1
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 7.1e-21 105.5 250 34.4
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.6e-20 104.4 299 31.1
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.6e-20 104.4 185 47.0
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.6e-20 104.4 148 48.6
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.6e-20 104.4 245 38.4
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.5e-20 103.2 197 43.7
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 3.5e-20 103.2 225 38.7
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 6.0e-20 102.4 227 39.2
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.0e-19 101.7 146 47.9
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 3.0e-19 100.1 218 39.0
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.9e-19 99.8 229 34.5
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 5.1e-19 99.4 326 30.1
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.1e-18 98.2 258 34.5
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 2.8e-17 93.6 106 52.8
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 3.6e-17 93.2 129 52.7
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.8e-17 92.8 177 37.3
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.4e-16 91.3 214 37.4
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.4e-16 91.3 217 35.9
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.4e-16 91.3 188 39.4
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 3.1e-16 90.1 101 57.4
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 4.0e-16 89.7 284 35.2
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 6.9e-16 89.0 177 35.6
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.2e-15 88.2 87 60.9
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.5e-15 87.8 252 34.1
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 5.8e-15 85.9 194 36.1
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.9e-14 83.6 188 36.2
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.9e-14 83.6 188 35.1
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.8e-14 83.2 175 35.4
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 2.4e-13 80.5 220 33.2
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 3.2e-13 80.1 108 46.3
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 4.2e-13 79.7 181 37.0
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.4e-13 79.3 148 39.9
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 5.4e-13 79.3 181 37.0
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 2.7e-12 77.0 159 39.0
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 3.5e-12 76.6 91 49.5
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.9e-11 73.2 317 27.4
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 6.7e-11 72.4 51 76.5
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.9e-10 70.9 180 34.4
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.9e-10 70.9 180 34.4
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 9.6e-10 68.6 85 49.4
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.3e-09 68.2 173 34.7
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 2.1e-09 67.4 89 44.9
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.8e-08 64.3 58 60.3
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.8e-08 64.3 104 44.2
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 4.0e-08 63.2 204 30.9
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 5.3e-08 62.8 164 30.5
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.2e-07 61.6 64 57.8
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 9.9e-07 58.5 158 32.3


User provided reference genes

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