Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 1.8e-293 1011.9 538 100.0
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 3.1e-200 702.2 538 69.1
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 1.1e-197 693.7 542 67.5
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 6.9e-192 674.5 484 71.9
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 8.4e-190 667.5 505 68.7
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 4.2e-189 665.2 544 64.7
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 5.4e-189 664.8 497 68.2
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.7e-188 662.5 543 64.3
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.3e-187 659.4 546 63.9
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.9e-187 658.7 543 63.9
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 3.9e-187 658.7 543 63.9
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 3.1e-184 649.0 555 61.8
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 4.0e-184 648.7 544 63.4
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 4.5e-183 645.2 541 63.2
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 7.1e-181 637.9 503 67.4
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.1e-180 636.3 582 60.1
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.1e-180 636.3 498 65.7
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 2.7e-180 636.0 538 63.2
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 3.0e-179 632.5 505 65.0
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 3.9e-179 632.1 498 64.9
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 6.7e-179 631.3 498 64.7
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 1.3e-177 627.1 539 61.6
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 4.8e-177 625.2 539 61.8
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 6.2e-177 624.8 552 61.2
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 2.4e-176 622.9 545 60.9
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 3.1e-176 622.5 549 60.8
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 1.5e-175 620.2 506 64.8
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 3.4e-175 619.0 540 61.5
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.0e-174 617.5 560 60.4
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 2.2e-174 616.3 482 65.4
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.4e-173 613.6 540 59.8
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 2.5e-173 612.8 538 61.0
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.5e-173 612.8 538 61.0
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.7e-172 609.4 538 60.6
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 6.0e-172 608.2 538 60.6
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 6.0e-172 608.2 499 64.5
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.3e-171 607.1 551 59.9
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 3.0e-171 605.9 506 63.0
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 6.7e-171 604.7 506 62.8
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.5e-170 603.6 483 63.8
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 1.5e-170 603.6 483 63.8
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 3.3e-170 602.4 500 63.4
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 7.4e-170 601.3 520 61.5
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.4e-168 596.3 539 59.7
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.4e-167 592.4 540 61.1
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 1.9e-165 586.6 499 62.9
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 2.5e-165 586.3 571 56.7
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 2.5e-165 586.3 500 61.4
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.0e-163 580.9 495 62.0
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 8.7e-163 577.8 477 62.9
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 1.5e-162 577.0 495 61.2
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.9e-162 576.6 477 62.7
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.6e-161 573.5 503 60.0
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 3.7e-161 572.4 477 62.9
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 3.4e-159 565.8 545 57.2
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 2.2e-158 563.1 546 57.0
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 4.2e-157 558.9 503 59.2
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.1e-156 556.6 503 60.0
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 6.1e-156 555.1 443 64.3
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 4.3e-154 548.9 527 57.5
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 1.3e-153 547.4 566 57.1
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 2.2e-153 546.6 477 60.4
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 6.3e-153 545.0 563 54.2
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.3e-150 537.3 502 57.8
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.9e-150 536.2 497 58.6
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 2.1e-148 530.0 546 54.2
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.5e-146 523.9 511 56.8
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.4e-144 517.3 444 59.9
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 2.0e-143 513.5 539 54.4
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 6.5e-142 508.4 546 54.6
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.6e-140 503.8 552 51.6
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.4e-136 490.7 425 61.4
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 2.4e-136 490.0 406 62.8
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 1.7e-134 483.8 481 52.6
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.7e-132 476.5 576 49.8
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.3e-129 467.6 452 54.9
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.0e-118 429.1 342 65.2
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 3.7e-113 412.9 337 62.0
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 4.6e-111 406.0 475 49.7
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 2.5e-109 400.2 359 60.4
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 1.4e-107 394.4 454 48.9
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.5e-98 364.4 386 51.0
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 1.5e-93 347.8 439 45.8
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 3.2e-88 330.1 473 43.8
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 4.6e-79 299.7 342 51.2
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.5e-77 294.7 432 40.3
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 4.8e-76 289.7 437 40.0
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 6.9e-75 285.8 473 37.8
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.4e-74 283.1 431 41.5
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.9e-73 280.4 465 39.6
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 6.4e-73 279.3 453 39.1
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 1.4e-72 278.1 428 39.0
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 2.4e-72 277.3 431 39.2
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 6.0e-71 272.7 527 36.8
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.0e-70 271.9 435 39.8
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 1.7e-70 271.2 437 38.9
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 8.7e-70 268.9 238 61.3
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.8e-68 263.8 441 38.1
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 3.6e-68 263.5 474 36.5
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 8.1e-68 262.3 438 39.7
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.4e-67 261.5 424 38.9
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.4e-67 261.5 417 40.8
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.3e-67 259.6 469 38.4
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 6.9e-67 259.2 430 39.1
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.9e-67 259.2 424 37.5
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-66 257.7 429 39.2
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 2.0e-66 257.7 434 39.9
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 9.3e-64 248.8 428 38.6
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.1e-63 247.7 300 50.0
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.5e-63 246.9 367 42.2
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.9e-62 243.4 436 37.6
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 1.1e-61 241.9 418 38.3
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 1.9e-61 241.1 418 38.3
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 3.3e-61 240.4 419 37.2
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 3.3e-61 240.4 400 37.8
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 4.3e-61 240.0 400 37.8
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 4.3e-61 240.0 428 36.7
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 8.1e-60 235.7 435 36.1
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 8.1e-60 235.7 439 36.7
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 5.3e-59 233.0 374 39.0
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.2e-58 231.9 438 36.1
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 1.2e-58 231.9 393 38.4
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-56 224.2 480 34.2
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 5.1e-54 216.5 435 35.6
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.5e-53 214.9 431 32.9
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 8.2e-52 209.1 429 34.3
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 8.2e-52 209.1 470 33.4
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 4.1e-51 206.8 570 29.8
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 9.0e-51 205.7 432 34.3
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 2.9e-49 200.7 167 64.1
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.4e-49 199.1 127 96.9
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.0e-46 192.2 372 36.8
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 3.1e-43 180.6 151 57.6
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.5e-40 169.9 263 39.5
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.1e-38 163.3 437 30.9
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.1e-37 162.2 275 35.6
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 1.4e-35 155.2 377 30.8
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.4e-35 155.2 215 43.3
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.2e-33 147.9 237 37.6
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 4.2e-32 143.7 108 61.1
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.4e-30 138.7 265 38.1
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 6.7e-30 136.3 92 70.7
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 2.0e-29 134.8 190 45.3
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 2.0e-26 124.8 189 38.1
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.5e-26 124.0 278 39.6
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 5.0e-25 120.2 145 48.3
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 3.2e-24 117.5 247 34.0
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 1.5e-21 108.6 126 48.4
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 3.1e-19 100.9 138 42.0
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.0e-19 99.8 122 49.2
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 9.1e-19 99.4 218 33.9
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 7.7e-18 96.3 65 64.6
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.3e-17 95.5 142 39.4
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 5.0e-17 93.6 218 31.2
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.2e-16 90.9 90 52.2
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 7.2e-16 89.7 319 27.3
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 8.0e-15 86.3 115 46.1
Thhalv10015673m.g Eutrema salsugineum HOM05D003798 ORTHO05D023659 3.0e-14 84.3 321 25.9
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 5.2e-14 83.6 162 35.8
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 5.2e-14 83.6 80 52.5
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 6.8e-14 83.2 60 65.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.5e-13 82.0 313 26.5
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 2.6e-13 81.3 59 64.4
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 4.4e-13 80.5 114 37.7
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 2.8e-12 77.8 181 25.4
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.8e-12 77.0 139 34.5
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 1.1e-11 75.9 135 39.3
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 1.4e-11 75.5 102 47.1
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 7.0e-11 73.2 120 40.8
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 9.1e-11 72.8 142 35.2
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 2.7e-10 71.2 129 32.6
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 3.5e-10 70.9 74 48.6
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 6.5e-09 66.6 74 52.7
AL2G38120 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.1e-08 65.9 123 32.5
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 3.2e-08 64.3 56 55.4
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 4.2e-08 63.9 81 46.9
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 5.5e-08 63.5 84 44.0
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 7.2e-08 63.2 124 33.1
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 7.2e-08 63.2 135 37.0
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 1.8e-06 58.5 61 49.2


User provided reference genes

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