Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 4.2e-215 751.1 390 100.0
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.5e-172 609.8 388 79.9
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 8.0e-166 587.4 390 77.9
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 5.2e-165 584.7 389 77.1
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.2e-164 583.6 390 77.9
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 3.7e-163 578.6 390 76.4
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 3.7e-163 578.6 390 76.2
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 6.3e-163 577.8 390 75.9
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 4.5e-161 571.6 390 75.6
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.7e-160 569.7 389 74.3
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 2.3e-160 569.3 390 74.4
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.3e-159 565.5 390 75.6
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 4.2e-159 565.1 390 75.6
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 9.5e-159 563.9 388 73.5
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 9.5e-159 563.9 390 75.4
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 1.6e-158 563.1 390 73.8
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 1.6e-158 563.1 390 75.1
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.8e-158 562.4 390 73.6
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 4.7e-158 561.6 390 75.6
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 6.1e-158 561.2 390 74.4
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.0e-157 560.5 389 75.3
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 2.3e-157 559.3 390 72.8
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 2.3e-157 559.3 390 74.1
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 6.8e-157 557.8 390 74.4
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.2e-156 557.0 390 73.1
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 4.4e-156 555.1 390 74.1
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 4.4e-156 555.1 385 73.2
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 5.7e-156 554.7 390 72.3
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.7e-155 553.1 388 73.2
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 2.2e-155 552.7 388 72.4
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 3.7e-155 552.0 385 73.0
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 6.3e-155 551.2 385 73.0
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 8.3e-155 550.8 390 73.8
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 8.3e-155 550.8 385 74.0
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.1e-154 550.4 385 72.5
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.4e-154 550.1 388 74.2
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 4.1e-154 548.5 390 72.1
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 5.4e-154 548.1 390 73.1
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 9.2e-154 547.4 391 73.4
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 4.6e-153 545.0 391 74.2
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 5.9e-153 544.7 388 72.2
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 7.8e-153 544.3 390 71.5
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 1.0e-152 543.9 390 73.1
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.7e-152 543.1 390 73.1
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.7e-152 543.1 390 73.1
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.7e-152 543.1 387 71.8
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 2.9e-152 542.3 390 73.3
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 3.9e-152 542.0 390 71.8
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 5.0e-152 541.6 385 71.7
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 6.6e-152 541.2 390 73.3
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.1e-151 540.4 390 72.6
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 2.5e-151 539.3 388 72.9
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 3.3e-151 538.9 392 73.2
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 3.3e-151 538.9 393 72.5
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 9.5e-151 537.3 388 71.4
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 1.2e-150 537.0 408 69.6
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 2.1e-150 536.2 390 71.5
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.0e-149 533.9 390 71.3
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.3e-149 532.7 390 72.8
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 4.0e-149 531.9 389 70.2
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 4.0e-149 531.9 390 69.7
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 5.2e-149 531.6 390 71.5
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 1.2e-148 530.4 385 69.6
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 4.4e-148 528.5 385 71.7
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.4e-148 528.5 390 71.3
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 9.8e-148 527.3 379 71.5
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 9.8e-148 527.3 357 75.4
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 9.8e-148 527.3 390 71.3
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.7e-147 526.6 390 69.2
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.7e-147 526.6 391 70.6
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 2.2e-147 526.2 392 70.2
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 3.7e-147 525.4 390 70.0
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 4.9e-147 525.0 416 69.0
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 8.3e-147 524.2 390 69.5
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.6e-145 520.0 350 76.3
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 7.8e-145 517.7 401 67.3
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.1e-143 513.8 422 66.4
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.3e-143 511.9 422 65.9
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.7e-142 508.4 422 65.6
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 8.1e-142 507.7 391 68.0
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.1e-141 507.3 422 65.9
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.4e-141 506.9 390 67.7
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 4.6e-137 491.9 387 67.2
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 6.0e-137 491.5 390 63.3
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 1.7e-136 490.0 386 66.8
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 3.9e-136 488.8 386 66.6
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.9e-136 488.8 390 64.9
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 5.1e-136 488.4 387 65.9
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 5.1e-136 488.4 351 72.6
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 6.6e-136 488.0 385 66.5
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.5e-135 486.9 388 63.4
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 2.5e-135 486.1 386 66.3
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 2.5e-135 486.1 386 66.3
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.3e-135 485.7 342 72.8
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 3.3e-135 485.7 385 66.8
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 5.6e-135 485.0 388 66.8
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 7.3e-135 484.6 386 67.4
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 2.8e-134 482.6 387 65.9
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 2.8e-134 482.6 350 71.1
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 3.6e-134 482.3 387 65.9
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 3.6e-134 482.3 390 63.8
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 8.1e-134 481.1 390 63.8
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 1.4e-133 480.3 386 65.8
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.8e-133 479.9 386 66.6
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 9.9e-132 474.2 386 64.8
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 6.4e-131 471.5 390 64.9
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 4.1e-130 468.8 337 71.5
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.0e-128 464.2 386 64.8
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 8.6e-128 461.1 386 64.8
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 3.3e-127 459.1 386 64.2
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 5.2e-125 451.8 389 61.2
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 6.8e-125 451.4 389 60.7
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.5e-124 450.3 386 63.5
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 6.4e-123 444.9 394 59.9
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.7e-120 436.8 400 59.8
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 2.3e-120 436.4 381 60.6
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 1.9e-119 433.3 386 61.7
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 1.2e-116 424.1 399 58.4
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.5e-116 423.7 401 57.4
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.3e-115 420.6 390 58.5
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 4.8e-110 402.1 390 55.9
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.5e-103 379.8 390 54.9
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 3.3e-103 379.4 295 64.1
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 6.3e-94 348.6 273 65.2
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 1.3e-91 340.9 415 48.0
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 1.0e-88 331.3 441 44.7
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.2e-83 313.5 239 66.5
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 3.8e-83 312.8 370 48.4
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 2.7e-81 306.6 267 59.9
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 7.4e-79 298.5 301 58.1
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.1e-73 280.4 388 43.3
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 9.7e-63 245.0 463 36.5
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.0e-56 224.9 164 70.1
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 5.9e-52 209.1 244 47.5
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.0e-51 208.4 150 76.0
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.3e-51 208.0 142 75.4
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.6e-41 174.5 175 57.1
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 6.1e-41 172.6 128 70.3
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.3e-32 144.1 398 30.7
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 3.1e-32 143.7 177 45.2
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 3.4e-31 140.2 151 53.0
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 4.4e-31 139.8 89 78.7
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 3.2e-29 133.7 155 51.6
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.9e-27 126.7 79 77.2
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 1.1e-26 125.2 138 54.3
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.9e-26 124.4 108 60.2
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 4.7e-25 119.8 120 58.3
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.2e-23 115.2 213 36.6
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.1e-21 108.6 82 65.9
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.4e-21 106.3 83 62.7
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 2.1e-20 104.4 128 52.3
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 4.6e-20 103.2 128 51.6
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 2.1e-17 94.4 127 48.0
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 2.8e-17 94.0 149 43.0
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 1.1e-16 92.0 82 54.9
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 3.1e-16 90.5 106 45.3
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 6.0e-12 76.3 102 50.0
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.7e-11 74.7 52 63.5
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 5.1e-11 73.2 83 49.4
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.4e-08 64.3 51 54.9
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 8.9e-08 62.4 38 86.8
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 2.0e-07 61.2 45 73.3
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 7.6e-07 59.3 34 82.4
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 2.9e-06 57.4 36 80.6
EL10Ac8g19613 Beta vulgaris HOM05D001512 ORTHO05D002407 6.4e-06 56.2 72 44.4
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 8.4e-06 55.8 83 42.2


User provided reference genes

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