Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 0.0e+00 1137.9 613 100.0
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.8e-119 434.1 627 49.3
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.0e-119 433.3 622 49.0
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.0e-116 422.2 626 47.3
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 1.3e-106 391.3 622 46.5
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 3.2e-100 370.2 617 44.1
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.0e-99 367.5 683 42.3
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 2.7e-99 367.1 619 44.4
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.1e-97 361.7 643 42.8
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 1.9e-97 360.9 688 41.9
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 7.3e-97 359.0 612 44.9
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 2.8e-96 357.1 351 61.8
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 1.4e-95 354.8 627 42.4
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 6.8e-95 352.4 640 41.4
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 2.6e-94 350.5 688 39.4
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 5.8e-94 349.4 643 41.4
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 7.5e-94 349.0 633 41.5
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 9.8e-94 348.6 635 39.8
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 2.4e-92 344.0 647 41.1
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 1.2e-91 341.7 689 39.9
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.5e-91 340.1 636 41.5
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 1.0e-90 338.6 627 40.5
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 2.3e-90 337.4 695 38.6
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 3.9e-90 336.7 336 58.0
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 8.6e-90 335.5 633 40.6
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.1e-89 335.1 583 40.7
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 1.5e-89 334.7 624 41.5
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 5.6e-89 332.8 626 39.6
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 7.3e-89 332.4 655 40.3
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.6e-88 331.3 628 41.6
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.1e-88 330.9 611 41.4
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.1e-88 330.9 638 39.8
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 2.8e-88 330.5 651 39.0
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 8.1e-88 328.9 649 41.1
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 8.1e-88 328.9 649 39.3
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.1e-87 328.6 282 66.7
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 1.1e-87 328.6 636 39.2
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.4e-87 328.2 638 38.9
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 8.9e-87 325.5 628 39.8
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.5e-86 324.7 625 40.0
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 5.8e-86 322.8 645 38.0
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.7e-85 321.2 678 38.2
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.9e-85 320.5 629 38.3
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 1.1e-84 318.5 622 40.0
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.4e-84 318.2 641 38.1
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.9e-84 317.8 627 39.7
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 2.4e-84 317.4 674 37.5
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.6e-83 314.7 612 39.9
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.1e-83 314.3 693 37.1
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 2.7e-83 313.9 615 42.9
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.0e-82 312.0 340 57.1
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 1.3e-82 311.6 594 41.9
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 8.6e-82 308.9 613 38.7
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 1.1e-81 308.5 604 39.7
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 5.6e-81 306.2 654 38.2
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 9.5e-81 305.4 520 44.4
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.6e-80 304.7 608 38.8
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.6e-80 303.5 645 39.2
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 6.2e-80 302.8 621 39.0
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.2e-78 298.5 703 36.3
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 1.5e-78 298.1 607 39.0
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.5e-78 298.1 661 36.2
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 1.5e-78 298.1 647 37.2
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 4.4e-78 296.6 653 37.7
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 9.9e-78 295.4 622 38.4
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.3e-77 295.0 616 38.5
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.2e-77 294.3 578 39.8
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 3.8e-77 293.5 630 37.3
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 6.4e-77 292.7 629 39.1
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 8.4e-77 292.4 638 35.9
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 8.4e-77 292.4 639 38.5
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 1.1e-76 292.0 641 39.9
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 3.2e-76 290.4 620 38.7
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 4.1e-76 290.0 614 38.3
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 5.4e-76 289.7 611 38.1
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 7.1e-76 289.3 579 40.1
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.6e-75 288.1 609 39.1
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 1.6e-75 288.1 369 50.4
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 2.1e-75 287.7 633 38.2
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 4.6e-75 286.6 680 36.6
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 4.6e-75 286.6 626 38.2
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 6.0e-75 286.2 615 38.9
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 6.0e-75 286.2 617 37.6
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 7.8e-75 285.8 604 38.2
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.3e-74 285.0 645 39.5
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.7e-74 284.6 274 63.9
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.7e-74 284.6 658 37.2
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.3e-74 284.3 326 53.4
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 5.1e-74 283.1 604 37.7
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 8.6e-74 282.3 604 37.6
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 1.1e-73 282.0 600 38.2
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.5e-73 281.6 561 36.7
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 2.8e-72 277.3 648 38.4
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 5.2e-71 273.1 539 39.5
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 6.9e-71 272.7 628 35.4
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.4e-70 270.4 641 35.9
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 3.4e-70 270.4 606 36.8
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 9.9e-70 268.9 621 37.0
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.8e-69 266.9 614 37.0
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 6.4e-69 266.2 656 35.2
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 8.4e-69 265.8 309 54.4
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.9e-68 264.6 622 36.7
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 2.4e-68 264.2 611 36.2
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.2e-67 261.9 621 35.3
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.0e-66 258.8 228 65.8
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 5.1e-66 256.5 634 36.9
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.5e-65 255.0 610 35.6
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.3e-65 253.8 276 57.2
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.3e-65 253.8 276 57.2
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 4.3e-65 253.4 675 35.1
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 9.6e-65 252.3 600 35.8
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 2.4e-63 247.7 562 39.1
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 5.3e-63 246.5 605 35.9
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 3.4e-62 243.8 642 33.6
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 9.9e-62 242.3 629 34.2
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 8.4e-61 239.2 567 36.9
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 1.9e-60 238.0 616 33.1
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 3.2e-60 237.3 595 34.3
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 4.2e-60 236.9 637 36.4
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 6.0e-59 233.0 613 34.7
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 3.0e-58 230.7 217 63.1
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 3.0e-58 230.7 222 62.2
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 3.9e-58 230.3 631 33.0
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 1.5e-57 228.4 596 33.6
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 4.3e-57 226.9 595 33.6
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 5.6e-57 226.5 599 33.9
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 1.6e-56 224.9 267 52.4
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 2.8e-56 224.2 612 32.2
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 8.1e-56 222.6 491 38.9
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 1.4e-52 211.8 630 31.9
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 7.9e-51 206.1 637 33.1
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 2.3e-50 204.5 575 31.8
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 6.9e-47 193.0 631 31.5
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 2.5e-44 184.5 446 34.1
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 3.2e-44 184.1 327 41.0
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.6e-43 181.8 279 39.8
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 4.8e-40 170.2 232 50.4
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.8e-39 168.3 245 42.9
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 1.8e-39 168.3 621 29.5
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 1.8e-39 168.3 600 29.3
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.4e-38 164.1 422 35.5
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 1.0e-37 162.5 306 36.6
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 2.5e-36 157.9 176 56.8
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 3.6e-35 154.1 450 32.4
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 6.1e-35 153.3 294 39.1
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 6.1e-35 153.3 524 31.3
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.8e-31 141.7 265 35.5
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 5.5e-28 130.2 122 67.2
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.1e-27 126.7 255 38.0
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 1.7e-24 118.6 569 27.8
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 4.1e-23 114.0 174 42.5
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.6e-19 100.9 187 39.0
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.7e-19 100.5 284 34.5
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 1.4e-18 99.0 166 44.6
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.5e-17 95.5 516 25.6
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.5e-17 95.5 193 42.0
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 8.2e-16 89.7 72 70.8
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 5.3e-15 87.0 79 62.0
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 1.2e-14 85.9 90 55.6
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 2.9e-13 81.3 281 31.3
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 7.2e-12 76.6 127 40.9
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 4.7e-11 73.9 91 49.5
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.0e-10 70.9 96 44.8
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 4.0e-10 70.9 70 62.9
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 8.8e-10 69.7 44 75.0
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 8.8e-10 69.7 175 38.3
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.5e-09 68.9 74 59.5
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 1.5e-09 68.9 102 45.1
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.3e-09 67.8 111 44.1
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.3e-09 67.8 48 68.8
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 4.4e-09 67.4 203 27.6
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 7.5e-09 66.6 151 36.4
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 1.4e-07 62.4 104 46.2
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.1e-07 61.2 105 40.0
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 7.0e-07 60.1 55 50.9
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 7.0e-07 60.1 55 50.9
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 2.0e-06 58.5 47 55.3
MBI06_g17810_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D010670 5.9e-06 57.0 98 44.9


User provided reference genes

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