Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 4.4e-245 850.9 438 100.0
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 7.0e-126 454.9 442 57.0
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 8.5e-116 421.4 442 52.5
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 4.8e-103 379.0 443 49.9
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 5.4e-102 375.6 445 50.8
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 2.7e-101 373.2 442 49.5
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 9.5e-99 364.8 446 50.2
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.6e-98 364.0 436 48.9
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 6.8e-97 358.6 443 47.4
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.0e-93 347.1 448 48.7
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 3.5e-93 346.3 445 45.8
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 2.3e-92 343.6 444 46.4
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 5.0e-92 342.4 446 46.6
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 5.0e-92 342.4 441 46.9
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 5.6e-91 339.0 442 45.5
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 9.5e-91 338.2 444 46.2
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.4e-89 334.3 398 51.0
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.3e-89 333.6 441 45.4
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 4.0e-89 332.8 366 54.1
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 7.5e-88 328.6 444 45.3
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 3.2e-86 323.2 444 45.0
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 1.2e-85 321.2 455 43.5
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 2.0e-85 320.5 440 43.6
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 4.6e-85 319.3 444 44.4
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.7e-84 317.4 436 45.0
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 5.0e-84 315.8 441 44.4
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.5e-83 314.3 446 43.3
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 4.3e-83 312.8 445 43.4
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 9.5e-83 311.6 401 47.4
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.4e-81 307.8 443 43.3
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 2.3e-81 307.0 447 43.2
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 8.9e-81 305.1 439 43.7
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.0e-80 303.9 440 42.7
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 4.4e-80 302.8 442 43.0
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 7.5e-80 302.0 442 43.0
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 9.8e-80 301.6 442 43.0
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.9e-78 297.4 445 41.8
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 2.4e-78 297.0 473 40.0
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 3.2e-78 296.6 446 43.0
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 9.2e-78 295.0 356 47.5
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.6e-77 294.3 446 42.6
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.7e-77 293.5 442 42.3
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 3.5e-77 293.1 366 47.0
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 6.0e-77 292.4 451 43.2
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 2.3e-76 290.4 449 43.7
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 6.6e-76 288.9 443 42.2
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 6.6e-76 288.9 446 41.7
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 8.6e-76 288.5 447 42.5
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 8.6e-76 288.5 442 42.5
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 1.1e-75 288.1 377 44.0
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.3e-75 286.6 447 41.6
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.3e-75 286.2 447 41.4
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 9.5e-75 285.0 445 41.6
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 9.5e-75 285.0 438 42.5
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.6e-74 284.3 447 41.4
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.6e-74 284.3 443 42.7
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 2.1e-74 283.9 447 41.6
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 2.8e-74 283.5 444 43.7
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 3.6e-74 283.1 444 41.0
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 4.7e-74 282.7 436 41.5
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 6.2e-74 282.3 456 42.3
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.3e-73 280.4 382 43.5
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 2.3e-73 280.4 447 42.5
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 6.8e-73 278.9 445 40.0
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 6.8e-73 278.9 391 43.0
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 6.8e-73 278.9 461 41.4
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 2.6e-72 276.9 377 44.0
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 3.4e-72 276.6 443 41.5
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 9.9e-72 275.0 444 41.0
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 9.9e-72 275.0 444 41.0
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 2.2e-71 273.9 449 40.8
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.9e-71 273.5 445 40.7
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 3.7e-71 273.1 447 40.3
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 3.7e-71 273.1 377 41.9
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 3.7e-71 273.1 445 40.7
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 6.4e-71 272.3 327 48.3
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 6.4e-71 272.3 353 47.0
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.9e-70 270.8 447 40.0
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 2.4e-70 270.4 445 40.9
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 5.4e-70 269.2 441 39.5
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.2e-69 268.1 443 40.9
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 2.7e-69 266.9 445 40.4
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.7e-68 264.2 449 39.9
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 3.0e-68 263.5 441 38.3
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 1.9e-67 260.8 415 39.8
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 1.9e-67 260.8 445 40.0
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 1.6e-66 257.7 442 38.0
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 5.2e-65 252.7 446 38.8
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 2.6e-64 250.4 369 41.7
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 3.8e-63 246.5 446 38.1
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 8.4e-63 245.4 444 36.9
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 1.1e-62 245.0 297 48.1
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.1e-62 245.0 443 36.1
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.4e-62 244.6 373 41.6
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 7.1e-62 242.3 384 40.6
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 7.1e-62 242.3 447 37.8
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.6e-61 241.1 435 37.7
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 2.1e-61 240.7 457 37.9
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.1e-59 235.0 447 35.8
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.5e-59 234.6 443 35.0
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 2.5e-59 233.8 443 35.2
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.5e-59 233.8 449 35.2
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 7.3e-59 232.3 443 35.4
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 9.6e-59 231.9 446 37.0
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 4.8e-58 229.6 447 34.2
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 4.8e-58 229.6 442 36.0
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 1.4e-57 228.0 447 34.0
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.8e-57 227.6 425 35.3
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 1.3e-55 221.5 444 34.0
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 4.9e-55 219.5 308 40.3
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 4.2e-54 216.5 361 40.4
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 7.1e-54 215.7 308 39.9
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.5e-51 208.0 404 33.7
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 3.3e-51 206.8 447 32.7
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 5.6e-51 206.1 376 36.4
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.6e-50 204.5 443 30.9
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 2.8e-50 203.8 448 33.0
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 4.0e-49 199.9 384 36.7
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 6.9e-49 199.1 431 33.9
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.2e-48 198.4 430 34.7
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 2.0e-48 197.6 450 33.3
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 9.9e-48 195.3 405 34.3
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 6.4e-47 192.6 446 33.4
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 1.1e-46 191.8 290 41.7
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 5.3e-41 172.9 180 52.2
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 9.3e-38 162.2 383 29.8
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 1.0e-36 158.7 404 30.4
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 3.9e-36 156.8 390 32.1
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.9e-35 154.5 384 30.5
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 2.2e-31 141.0 171 43.3
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 2.2e-31 141.0 273 32.6
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 3.3e-27 127.1 224 37.5
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 4.1e-25 120.2 371 31.5
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 4.5e-24 116.7 175 40.0
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 7.9e-21 105.9 170 37.1
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 3.9e-20 103.6 404 25.7
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 2.0e-19 101.3 83 65.1
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 2.8e-18 97.4 155 36.1
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 3.7e-18 97.1 155 36.8
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 8.2e-18 95.9 155 35.5
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 8.2e-18 95.9 155 35.5
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 1.4e-17 95.1 176 35.8
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 4.5e-16 90.1 146 36.3
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.7e-15 88.2 131 43.5
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 3.9e-12 77.0 129 40.3
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 9.7e-11 72.4 275 29.1
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.0e-08 64.7 56 53.6
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 3.8e-07 60.5 128 28.9
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 6.5e-07 59.7 62 43.5
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-06 58.9 64 48.4
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.5e-06 58.5 52 63.5
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 1.9e-06 58.2 69 40.6
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 1.9e-06 58.2 69 40.6
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 7.2e-06 56.2 55 49.1
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 7.2e-06 56.2 55 49.1


User provided reference genes

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