Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03182 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 8.6e-143 510.4 269 100.0
Dinv22908 Davidia involucrata HOM05D006966 ORTHO05D008111 1.2e-24 117.9 216 41.2
Potri.013G027100 Populus trichocarpa HOM05D006966 ORTHO05D008111 1.5e-22 110.9 242 40.9
TAR633G0886 Trochodendron aralioides HOM05D006966 ORTHO05D008111 1.1e-20 104.8 301 34.2
Lj9P680T20 Lonicera japonica HOM05D006966 ORTHO05D008111 1.2e-19 101.3 307 33.6
Glyma.19G238400 Glycine max HOM05D006966 ORTHO05D008111 4.6e-19 99.4 228 37.3
Dinv40245 Davidia involucrata HOM05D000556 ORTHO05D008111 5.9e-19 99.0 287 34.8
PGSC0003DMG400028568 Solanum tuberosum HOM05D006966 ORTHO05D008111 5.9e-19 99.0 300 35.0
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 1.3e-18 97.8 300 33.0
Actinidia19807 Actinidia chinensis HOM05D001271 ORTHO05D008111 1.7e-18 97.4 225 37.8
Rhsim05G0145100 Rhododendron simsii HOM05D006966 ORTHO05D008111 3.9e-18 96.3 232 36.2
FAN09G4667 Fragaria x ananassa HOM05D006966 ORTHO05D008111 5.0e-18 95.9 293 32.8
FAN14G0100 Fragaria x ananassa HOM05D006966 ORTHO05D008111 8.6e-18 95.1 290 33.1
MBI19_g33142_MAGBIO Magnolia biondii HOM05D006966 ORTHO05D008111 1.5e-17 94.4 277 35.4
TAR362G0564 Trochodendron aralioides HOM05D006966 ORTHO05D008111 1.9e-17 94.0 215 40.5
FAN14G4059 Fragaria x ananassa HOM05D006966 ORTHO05D008111 3.3e-17 93.2 290 32.8
CSS0008116 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 4.3e-17 92.8 305 31.5
Potri.005G037600 Populus trichocarpa HOM05D006966 ORTHO05D008111 5.6e-17 92.4 239 39.3
FvH4_6g05230 Fragaria vesca HOM05D006966 ORTHO05D008111 7.3e-17 92.0 289 32.2
FAN05G1352 Fragaria x ananassa HOM05D006966 ORTHO05D008111 7.3e-17 92.0 240 35.8
Nitab4.5_0002848g0060 Nicotiana tabacum HOM05D006966 ORTHO05D008111 1.6e-16 90.9 284 32.7
Phvul.006G095100 Phaseolus vulgaris HOM05D006966 ORTHO05D008111 1.6e-16 90.9 221 35.3
Cc02_g32560 Coffea canephora HOM05D006966 ORTHO05D008111 2.1e-16 90.5 298 32.6
VMungo0540G1150 Vigna mungo HOM05D006966 ORTHO05D008111 2.8e-16 90.1 250 35.2
FAN05G0025 Fragaria x ananassa HOM05D006966 ORTHO05D008111 3.6e-16 89.7 240 35.4
FAN05G1324 Fragaria x ananassa HOM05D006966 ORTHO05D008111 3.6e-16 89.7 240 35.4
Glyma.03G240900 Glycine max HOM05D006966 ORTHO05D008111 4.7e-16 89.4 249 34.1
Hma1.2p1_0666F.1_g199360 Hydrangea macrophylla HOM05D006966 ORTHO05D008111 4.7e-16 89.4 325 32.6
CAN.G1134.3 Capsicum annuum HOM05D006966 ORTHO05D008111 1.1e-15 88.2 228 36.4
CDE05G1565 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 1.1e-15 88.2 298 31.5
Sabra05G0038600 Salix brachista HOM05D006966 ORTHO05D008111 1.8e-15 87.4 227 37.9
Atru.chr2.499 Acer truncatum HOM05D006966 ORTHO05D008111 3.1e-15 86.7 230 36.5
MELO3C004314.2 Cucumis melo HOM05D006966 ORTHO05D008111 4.0e-15 86.3 226 37.2
PSO210G4305 Papaver somniferum HOM05D006966 ORTHO05D008111 4.0e-15 86.3 236 36.0
Gohir.A11G262300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 5.2e-15 85.9 313 34.8
Ciclev10002008m.g Citrus clementina HOM05D006966 ORTHO05D008111 6.8e-15 85.5 247 36.4
ClCG02G016130 Citrullus lanatus HOM05D006966 ORTHO05D008111 8.9e-15 85.1 227 35.2
Solyc01g098570.2 Solanum lycopersicum HOM05D006966 ORTHO05D008111 8.9e-15 85.1 273 33.3
Lj7P485T19 Lonicera japonica HOM05D006966 ORTHO05D008111 1.2e-14 84.7 225 36.9
Ca_09380_v3 Cicer arietinum L. HOM05D006966 ORTHO05D008111 1.5e-14 84.3 188 37.2
Eucgr.H04442 Eucalyptus grandis HOM05D006966 ORTHO05D008111 1.5e-14 84.3 230 35.7
PSO832G1078 Papaver somniferum HOM05D006966 ORTHO05D008111 2.0e-14 84.0 241 35.7
Cpa.g.sc48.3 Carica papaya HOM05D006966 ORTHO05D008111 2.6e-14 83.6 232 33.6
CsaV3_2G004840 Cucumis sativus L. HOM05D006966 ORTHO05D008111 2.6e-14 83.6 229 37.1
MD12G1224900 Malus domestica HOM05D006966 ORTHO05D008111 2.6e-14 83.6 332 33.4
QL03p004162 Quercus lobata HOM05D006966 ORTHO05D008111 3.4e-14 83.2 228 35.5
TWI12G1291 Tripterygium wilfordii HOM05D006966 ORTHO05D008111 5.8e-14 82.4 255 33.7
Duzib177G0559 Durio zibethinus HOM05D006966 ORTHO05D008111 7.5e-14 82.0 329 30.1
Nn3g21196 Nelumbo nucifera HOM05D006966 ORTHO05D008111 1.7e-13 80.9 222 35.6
Gorai.004G243700 Gossypium raimondii HOM05D006966 ORTHO05D008111 3.7e-13 79.7 226 34.1
AT1G54740 Arabidopsis thaliana HOM05D006966 ORTHO05D008111 6.4e-13 79.0 146 41.1
Gohir.A08G212500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 8.3e-13 78.6 224 32.6
CDE11G0954 Ceratophyllum demersum HOM05D006966 ORTHO05D008111 1.4e-12 77.8 215 34.4
arahy.Tifrunner.gnm1.ann1.3A5YKQ Arachis hypogaea HOM05D006966 ORTHO05D008111 1.9e-12 77.4 207 36.2
Aa31LG2G11900 Aethionema arabicum HOM05D006966 ORTHO05D008111 3.2e-12 76.6 138 39.9
Duzib128G0678 Durio zibethinus HOM05D006966 ORTHO05D008111 3.2e-12 76.6 203 35.0
Gohir.D08G229500 Gossypium hirsutum HOM05D006966 ORTHO05D008111 4.1e-12 76.3 225 32.4
Medtr7g113950 Medicago truncatula HOM05D006966 ORTHO05D008111 5.4e-12 75.9 181 34.3
Sabra13G0027800 Salix brachista HOM05D006966 ORTHO05D008111 5.4e-12 75.9 282 33.3
AL1G65140 Arabidopsis lyrata HOM05D006966 ORTHO05D008111 7.0e-12 75.5 147 41.5
MD04G1210600 Malus domestica HOM05D006966 ORTHO05D008111 7.0e-12 75.5 317 31.2
SpUn0002_0320 Schrenkiella parvula HOM05D006966 ORTHO05D008111 9.2e-12 75.1 126 41.3
Cfa006536 Carpinus fangiana HOM05D006966 ORTHO05D008111 1.6e-11 74.3 316 30.4
Ah.04g159860 Amaranthus hybridus HOM05D006966 ORTHO05D008111 2.0e-11 73.9 118 39.0
DCAR_012203 Daucus carota HOM05D004622 ORTHO05D005431 2.0e-11 73.9 143 35.0
Gorai.007G293600 Gossypium raimondii HOM05D006966 ORTHO05D008111 3.5e-11 73.2 314 33.8
CANSAT54G0218 Cannabis sativa HOM05D006966 ORTHO05D008111 4.6e-11 72.8 195 36.9
Psat3g009600 Pisum sativum HOM05D006966 ORTHO05D008111 4.6e-11 72.8 258 30.6
PGR031G1796 Punica granatum HOM05D006966 ORTHO05D008111 4.6e-11 72.8 222 36.5
TPR.G33165 Trifolium pratense HOM05D006966 ORTHO05D008111 4.6e-11 72.8 174 31.6
BcaB04g20143 Brassica carinata HOM05D006966 ORTHO05D008111 6.0e-11 72.4 137 40.1
Prupe.6G331500 Prunus persica HOM05D006966 ORTHO05D008111 1.0e-10 71.6 307 29.0
DCAR_003308 Daucus carota HOM05D006966 ORTHO05D008111 1.3e-10 71.2 298 30.2
CiPaw.07G014000 Carya illinoinensis HOM05D006966 ORTHO05D008111 2.3e-10 70.5 219 35.2
Gohir.D11G272300 Gossypium hirsutum HOM05D006966 ORTHO05D008111 3.9e-10 69.7 213 34.3
Peaxi162Scf00434g00052 Petunia axillaris HOM05D006966 ORTHO05D008111 6.6e-10 68.9 125 41.6
TWI75G1018 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 6.6e-10 68.9 127 36.2
CARHR055880 Cardamine hirsuta HOM05D006966 ORTHO05D008111 3.3e-09 66.6 119 42.0
Lj1g0017885 Lotus japonicus HOM05D006966 ORTHO05D008111 3.3e-09 66.6 188 35.6
Thhalv10023602m.g Eutrema salsugineum HOM05D006966 ORTHO05D008111 4.3e-09 66.2 210 30.0
Nn4g26120 Nelumbo nucifera HOM05D006966 ORTHO05D008111 7.3e-09 65.5 217 33.6
CSS0005342 Camellia sinensis var. sinensis HOM05D006966 ORTHO05D008111 1.2e-08 64.7 189 31.7
CiPaw.08G167600 Carya illinoinensis HOM05D006966 ORTHO05D008111 1.2e-08 64.7 221 33.9
Aqoxy5G00570 Aquilegia oxysepala HOM05D006966 ORTHO05D008111 2.1e-08 63.9 252 30.2
Haze_04244 Corylus avellana HOM05D006966 ORTHO05D008111 2.8e-08 63.5 201 31.8
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 2.8e-08 63.5 165 31.5
Carub.0002s0866 Capsella rubella HOM05D006966 ORTHO05D008111 3.6e-08 63.2 117 41.0
FAN02G1750 Fragaria x ananassa HOM05D006966 ORTHO05D008111 3.6e-08 63.2 63 49.2
Solyc06g074270.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 3.6e-08 63.2 122 36.1
Thecc.05G299500 Theobroma cacao HOM05D006966 ORTHO05D008111 4.7e-08 62.8 321 31.8
ATR0580G269 Amborella trichopoda HOM05D006966 ORTHO05D008111 6.2e-08 62.4 187 36.9
Manes.08G123800 Manihot esculenta HOM05D006966 ORTHO05D008111 6.2e-08 62.4 315 29.8
Haze_23364 Corylus avellana HOM05D004622 ORTHO05D005431 1.1e-07 61.6 190 31.6
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 1.4e-07 61.2 124 34.7
Lalb_Chr06g0167831 Lupinus albus HOM05D006966 ORTHO05D008111 1.4e-07 61.2 118 35.6
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 1.8e-07 60.8 126 32.5
QL01p012122 Quercus lobata HOM05D004622 ORTHO05D005431 1.8e-07 60.8 130 32.3
TWI79G1499 Tripterygium wilfordii HOM05D004622 ORTHO05D005431 1.8e-07 60.8 126 33.3
Lj5g0008249 Lotus japonicus HOM05D006966 ORTHO05D008111 2.3e-07 60.5 116 39.7
Thecc.09G281500 Theobroma cacao HOM05D004622 ORTHO05D005431 2.3e-07 60.5 126 34.9
Duzib168G0112 Durio zibethinus HOM05D004622 ORTHO05D005431 3.1e-07 60.1 124 33.9
Sopen06g030720 Solanum pennellii HOM05D004622 ORTHO05D005431 3.1e-07 60.1 122 35.2
CiPaw.13G134900 Carya illinoinensis HOM05D004622 ORTHO05D005431 4.0e-07 59.7 168 33.3
PGSC0003DMG400005882 Solanum tuberosum HOM05D004622 ORTHO05D005431 4.0e-07 59.7 122 34.4
Glyma.11G182500 Glycine max HOM05D004622 ORTHO05D005431 5.2e-07 59.3 126 34.1
HPP92_009743 Vanilla planifolia HOM05D004622 ORTHO05D005431 5.2e-07 59.3 113 38.9
CiPaw.14G099300 Carya illinoinensis HOM05D004622 ORTHO05D005431 6.8e-07 58.9 223 28.3
Potri.005G209100 Populus trichocarpa HOM05D001105 ORTHO05D001870 6.8e-07 58.9 113 40.7
THA.LOC104823738 Tarenaya hassleriana HOM05D006966 ORTHO05D008111 6.8e-07 58.9 118 34.7
EL10Ac4g09297 Beta vulgaris HOM05D036395 ORTHO05D008111 8.9e-07 58.5 214 29.4
CAN.G649.9 Capsicum annuum HOM05D001105 ORTHO05D001870 8.9e-07 58.5 121 39.7
Gorai.001G122600 Gossypium raimondii HOM05D004622 ORTHO05D005431 8.9e-07 58.5 163 32.5
Lj2C965T2 Lonicera japonica HOM05D004622 ORTHO05D005431 1.5e-06 57.8 116 34.5
PSO801G0264 Papaver somniferum HOM05D004622 ORTHO05D005431 1.5e-06 57.8 157 32.5
Actinidia35466 Actinidia chinensis HOM05D004622 ORTHO05D005431 2.0e-06 57.4 118 34.7
CSS0048557 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 2.0e-06 57.4 201 28.9
Gohir.D07G114300 Gossypium hirsutum HOM05D004622 ORTHO05D005431 2.0e-06 57.4 166 31.9
MD11G1166300 Malus domestica HOM05D004622 ORTHO05D005431 2.0e-06 57.4 163 30.7
Sc09g0003390 Simmondsia chinensis HOM05D006966 ORTHO05D008111 2.0e-06 57.4 201 31.3
VMungo1080G1565 Vigna mungo HOM05D004622 ORTHO05D005431 2.0e-06 57.4 123 33.3
Nitab4.5_0000755g0020 Nicotiana tabacum HOM05D004622 ORTHO05D005431 2.6e-06 57.0 128 32.0
Phvul.005G123200 Phaseolus vulgaris HOM05D004622 ORTHO05D005431 2.6e-06 57.0 123 32.5
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 3.4e-06 56.6 223 28.3
Glyma.10G157600 Glycine max HOM05D006966 ORTHO05D008111 3.4e-06 56.6 71 52.1
TPR.G2724 Trifolium pratense HOM05D006966 ORTHO05D008111 3.4e-06 56.6 111 39.6
Manes.11G162600 Manihot esculenta HOM05D004622 ORTHO05D005431 4.4e-06 56.2 119 33.6
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 4.4e-06 56.2 126 31.0
Prupe.6G132300 Prunus persica HOM05D004622 ORTHO05D005431 4.4e-06 56.2 143 28.7
Migut.D02437 Erythranthe guttata HOM05D004622 ORTHO05D005431 5.8e-06 55.8 169 34.3
FAN11G1623 Fragaria x ananassa HOM05D004622 ORTHO05D005431 5.8e-06 55.8 126 34.9
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 5.8e-06 55.8 123 32.5
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 5.8e-06 55.8 168 31.0
Medtr2g086590 Medicago truncatula HOM05D004622 ORTHO05D005431 5.8e-06 55.8 219 29.2
Nitab4.5_0006738g0040 Nicotiana tabacum HOM05D004622 ORTHO05D005431 5.8e-06 55.8 125 31.2
Rhsim13G0020700 Rhododendron simsii HOM05D006966 ORTHO05D017198 5.8e-06 55.8 211 28.4
Actinidia07251 Actinidia chinensis HOM05D000892 ORTHO05D005431 7.5e-06 55.5 186 28.0
CSS0039489 Camellia sinensis var. sinensis HOM05D004622 ORTHO05D005431 7.5e-06 55.5 118 36.4
Lsat_1_v5_gn_2_59400 Lactuca sativa HOM05D004622 ORTHO05D005431 7.5e-06 55.5 125 32.8
TPR.G4653 Trifolium pratense HOM05D001105 ORTHO05D003643 7.5e-06 55.5 69 47.8
HPP92_011806 Vanilla planifolia HOM05D006966 ORTHO05D008111 7.5e-06 55.5 214 30.4
Cpa.g.sc195.5 Carica papaya HOM05D004622 ORTHO05D005431 9.9e-06 55.1 125 29.6
Ciclev10028879m.g Citrus clementina HOM05D004622 ORTHO05D005431 9.9e-06 55.1 171 29.8
Gohir.A07G110600 Gossypium hirsutum HOM05D004622 ORTHO05D005431 9.9e-06 55.1 175 32.6
Oeu035435.1 Olea europaea HOM05D004622 ORTHO05D005431 9.9e-06 55.1 210 28.1
Peaxi162Scf00040g00012 Petunia axillaris HOM05D004622 ORTHO05D005431 9.9e-06 55.1 158 31.6


User provided reference genes

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