Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 2212.6 1159 100.0
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1601.6 1171 73.2
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1558.9 1121 73.2
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1507.7 1128 70.1
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1503.0 1169 69.0
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1500.3 1115 70.6
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1494.9 1085 72.6
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1478.8 1120 69.0
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1469.9 1163 67.0
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1468.0 1147 67.8
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1455.7 1155 67.4
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1452.2 1148 67.9
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1452.2 1096 69.1
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1451.0 1121 68.3
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1442.2 1145 68.0
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1436.4 1170 66.3
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1427.9 1091 68.2
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1425.6 1011 72.6
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1425.6 1103 67.8
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1420.6 1157 66.2
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1418.7 1109 67.4
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1416.4 1088 68.0
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1415.2 1088 68.0
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1415.2 1223 63.5
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1412.9 1114 67.5
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1412.5 1170 65.4
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1412.1 1114 67.7
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1410.6 1120 66.5
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1408.3 1102 67.7
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1396.7 1090 67.2
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1394.4 1278 60.4
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1390.2 1171 63.5
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1377.8 1129 65.3
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1374.4 1134 64.5
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1372.5 1086 66.4
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1372.1 1093 66.5
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1368.6 1119 64.8
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1366.7 1110 65.0
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1357.4 1115 64.6
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1355.9 1110 64.7
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1354.3 1100 64.9
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1351.3 1098 64.1
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1344.3 1033 69.1
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1344.3 1101 64.5
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1335.9 1105 64.4
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1333.5 1087 64.8
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1330.5 1086 65.0
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1330.1 1087 65.0
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1327.0 1057 64.9
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1322.8 1084 64.9
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1321.2 1098 63.8
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1320.8 1065 63.8
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1320.1 1074 64.8
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1312.7 1080 63.0
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1310.8 1030 65.0
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1308.1 1108 63.5
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1307.7 1119 62.6
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1307.7 1103 63.1
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1307.4 1131 62.8
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1305.0 1095 62.7
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1304.3 1074 64.7
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1303.9 1130 61.9
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1303.5 1102 62.5
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1303.1 1079 62.1
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1299.3 1108 61.3
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1298.5 1036 64.2
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1297.3 1063 63.0
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1297.0 1094 62.3
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1289.6 1126 61.6
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1289.2 1081 62.5
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1288.5 1038 66.0
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1287.3 1071 62.6
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1286.9 1050 63.1
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1285.0 1112 61.8
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1280.4 1089 61.8
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1276.9 1078 62.5
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1276.9 1061 63.2
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1273.5 1074 61.9
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1273.5 1064 62.9
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1271.5 1061 61.9
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1270.4 1059 61.9
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1270.0 1077 62.5
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1266.9 1040 61.7
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1266.5 1078 62.4
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1263.4 1071 61.3
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1263.1 1059 61.7
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1261.1 1064 61.4
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1252.7 1142 61.6
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1234.6 1064 61.8
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1234.2 1105 61.5
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1232.6 1091 58.8
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1230.3 1062 59.5
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1220.3 1083 60.7
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1210.7 1334 51.3
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1205.7 1049 59.4
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1201.0 1036 60.7
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1185.2 891 68.9
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1182.5 1020 60.4
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1175.6 1031 60.0
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1158.7 1125 56.7
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1128.2 1111 55.8
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1114.8 880 66.8
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1100.1 861 65.2
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1088.6 1141 53.5
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 4.0e-311 1071.6 1096 55.6
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 1.4e-303 1046.6 778 70.2
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 8.7e-301 1037.3 1038 52.5
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.2e-296 1022.7 959 56.7
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.0e-293 1012.3 680 75.3
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.0e-280 970.7 1029 49.9
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 1.1e-274 950.7 803 62.9
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 5.0e-272 941.8 963 50.2
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 2.0e-257 893.3 1017 47.7
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 1.4e-245 854.0 688 66.7
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.3e-215 753.1 594 67.0
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.2e-211 740.3 495 75.6
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.2e-211 740.3 495 75.6
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 3.7e-211 739.6 1108 40.4
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 4.8e-142 510.0 420 65.7
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 6.6e-91 340.1 397 49.4
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 1.3e-62 246.1 1065 24.0
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 2.8e-57 228.4 165 69.1
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 1.7e-54 219.2 201 58.2
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.1e-53 216.5 205 56.1
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.5e-50 205.3 214 54.2
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.4e-48 199.5 143 65.0
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 4.1e-48 198.0 171 61.4
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.2e-37 161.4 174 52.3
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.2e-36 159.8 626 25.6
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 1.0e-35 156.8 166 52.4
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 4.1e-32 144.8 388 28.9
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 7.4e-26 124.0 107 59.8
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 2.2e-25 122.5 151 48.3
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 3.8e-22 111.7 94 57.4
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 4.8e-17 94.7 248 27.4
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.1e-16 92.0 106 51.9
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.0e-11 75.1 76 61.8
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.2e-10 73.6 272 27.9
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 1.2e-10 73.6 68 54.4
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.4e-08 66.6 74 51.4
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 1.8e-08 66.2 76 52.6
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 1.6e-07 63.2 56 42.9
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 1.0e-06 60.5 48 58.3
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 1.3e-06 60.1 78 43.6


User provided reference genes

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