Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 0.0e+00 1817.7 901 100.0
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1338.9 891 75.0
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1308.5 882 73.6
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1278.1 845 75.4
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1264.6 889 71.3
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1263.4 889 71.2
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1260.7 891 71.7
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1254.2 898 70.9
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1251.1 905 70.9
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1248.8 841 73.7
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1241.1 884 71.2
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 0.0e+00 1238.0 885 70.6
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1232.6 900 69.8
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1231.9 877 71.0
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1218.0 841 71.7
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1217.2 841 71.7
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1216.4 842 72.3
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1216.1 846 71.5
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1211.4 841 71.5
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1203.7 837 71.6
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1203.3 844 71.9
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1202.2 891 68.7
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1194.9 883 69.2
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1187.6 842 71.3
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1185.2 842 70.5
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1184.9 819 72.9
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1181.4 883 68.3
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1175.2 889 67.6
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1171.8 926 65.9
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 0.0e+00 1162.5 844 70.4
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1157.9 889 67.0
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1155.2 866 68.4
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1155.2 866 68.4
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 0.0e+00 1154.4 846 67.8
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 0.0e+00 1150.6 840 69.9
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 0.0e+00 1149.8 841 69.6
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 0.0e+00 1149.8 846 69.1
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1144.4 843 68.7
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 0.0e+00 1138.6 995 61.5
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 0.0e+00 1132.5 890 66.1
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 0.0e+00 1130.2 838 69.1
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1129.8 838 69.0
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 0.0e+00 1126.7 914 64.6
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 0.0e+00 1122.5 841 68.3
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 0.0e+00 1122.1 841 68.3
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1120.5 838 68.4
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 0.0e+00 1120.1 842 67.2
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 0.0e+00 1119.0 838 68.5
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1109.4 955 60.9
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 0.0e+00 1104.4 840 67.6
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 0.0e+00 1101.7 841 66.8
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1100.1 841 67.2
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 0.0e+00 1100.1 795 69.7
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1097.0 838 66.8
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1095.5 838 67.4
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 0.0e+00 1094.3 812 67.9
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 0.0e+00 1088.9 848 66.7
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 0.0e+00 1088.6 879 64.6
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 0.0e+00 1081.2 840 66.3
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1081.2 842 66.7
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 1.2e-311 1072.8 847 66.7
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 3.1e-311 1071.6 841 65.8
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 9.2e-311 1070.1 843 66.1
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 1.8e-309 1065.8 851 65.8
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 1.8e-306 1055.8 798 67.5
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 4.1e-306 1054.7 842 65.1
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 1.5e-303 1046.2 912 61.7
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 1.9e-303 1045.8 840 63.9
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 1.4e-301 1039.6 843 64.4
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 5.2e-301 1037.7 819 64.3
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 2.0e-300 1035.8 823 65.2
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 3.3e-300 1035.0 838 64.0
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 1.8e-298 1029.2 844 63.6
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 4.2e-295 1018.1 860 62.4
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 6.1e-294 1014.2 907 60.4
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 1.3e-280 969.9 848 61.2
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 5.0e-280 968.0 838 61.3
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 2.8e-278 962.2 836 62.0
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 4.7e-278 961.4 837 60.3
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 4.4e-276 954.9 837 60.1
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 4.4e-276 954.9 840 59.9
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 2.9e-275 952.2 843 60.0
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 8.3e-275 950.7 837 60.0
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 8.3e-275 950.7 839 60.9
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 5.6e-271 937.9 837 59.6
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 1.6e-265 919.8 843 59.2
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 2.1e-265 919.5 846 59.3
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 2.1e-265 919.5 846 59.3
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 3.0e-264 915.6 847 59.1
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 3.0e-264 915.6 847 59.1
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 6.4e-259 897.9 844 58.4
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 1.1e-255 887.1 846 57.9
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 6.4e-251 871.3 750 62.0
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 7.1e-250 867.8 790 59.1
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 8.1e-230 801.2 712 60.7
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 1.2e-228 797.3 797 56.6
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 6.3e-206 721.8 844 49.8
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.1e-205 719.5 888 47.6
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 6.7e-200 701.8 954 44.8
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.4e-189 667.5 510 68.4
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 7.2e-186 655.2 620 55.5
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 5.0e-179 632.5 399 77.4
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.6e-177 626.3 896 42.5
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 1.8e-168 597.4 369 78.6
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 2.7e-156 557.0 414 68.1
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.0e-143 514.2 354 72.9
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 1.7e-142 511.1 399 66.9
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 2.4e-141 507.3 438 62.8
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 1.1e-128 465.3 510 52.7
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 6.6e-123 446.0 275 78.9
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.4e-104 384.4 564 43.6
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.4e-104 384.4 564 43.6
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 2.5e-93 347.8 378 51.6
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 7.2e-85 319.7 284 57.4
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.4e-83 315.5 370 49.5
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 1.3e-81 308.9 175 82.3
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 2.5e-77 294.7 861 29.4
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 9.4e-77 292.7 150 90.7
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 3.3e-74 284.3 283 58.3
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 1.4e-64 252.3 137 86.9
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 7.0e-64 250.0 145 82.8
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.0e-60 236.5 137 80.3
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.0e-51 207.6 117 77.8
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 2.3e-46 191.8 223 43.5
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 7.5e-42 176.8 210 41.4
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 7.3e-37 160.2 187 50.3
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 5.8e-26 124.0 271 32.5
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 6.4e-25 120.6 129 50.4
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 1.3e-22 112.8 154 42.2
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 2.1e-15 89.0 129 41.1
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 6.0e-15 87.4 58 65.5
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-14 85.5 57 70.2
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 3.0e-14 85.1 50 82.0
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.7e-14 83.6 55 70.9
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.7e-14 83.6 55 70.9
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.7e-14 83.6 55 70.9
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.7e-14 83.6 55 70.9
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.7e-14 83.6 55 70.9
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.7e-14 83.6 55 70.9
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.7e-14 83.6 55 70.9
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.7e-14 83.6 55 70.9
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.7e-14 83.6 55 70.9
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.7e-14 83.6 55 70.9
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.7e-14 83.6 55 70.9
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 2.5e-13 82.0 217 27.6
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 3.6e-12 78.2 118 40.7
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 2.2e-09 68.9 33 84.8
A05p26530 Brassica napus HOM05D005283 ORTHO05D021637 5.1e-06 57.8 37 64.9
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 6.6e-06 57.4 50 58.0


User provided reference genes

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