Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 3.8e-44 181.0 85 100.0
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 5.3e-38 160.6 85 84.7
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 6.9e-38 160.2 85 83.5
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 4.5e-37 157.5 85 84.7
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 5.8e-37 157.1 81 85.2
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 9.9e-37 156.4 85 83.5
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 1.3e-36 156.0 80 91.2
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.3e-36 156.0 75 94.7
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 1.3e-36 156.0 86 84.9
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 1.7e-36 155.6 81 86.4
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 4.9e-36 154.1 79 84.8
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 4.9e-36 154.1 77 90.9
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 4.9e-36 154.1 80 85.0
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 6.4e-36 153.7 77 88.3
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 6.4e-36 153.7 79 86.1
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 6.4e-36 153.7 79 86.1
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 6.4e-36 153.7 79 86.1
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 6.4e-36 153.7 79 84.8
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 8.4e-36 153.3 76 92.1
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 1.1e-35 152.9 76 92.1
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 1.1e-35 152.9 76 92.1
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 1.1e-35 152.9 77 89.6
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 1.1e-35 152.9 85 84.7
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.4e-35 152.5 79 84.8
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.4e-35 152.5 79 84.8
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.4e-35 152.5 79 84.8
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 1.4e-35 152.5 76 90.8
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 1.4e-35 152.5 82 85.4
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 1.9e-35 152.1 75 90.7
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 1.9e-35 152.1 75 90.7
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 1.9e-35 152.1 75 90.7
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 1.9e-35 152.1 75 90.7
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 2.4e-35 151.8 74 90.5
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 2.4e-35 151.8 79 84.8
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 3.2e-35 151.4 85 83.5
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 3.2e-35 151.4 82 84.1
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 4.2e-35 151.0 78 88.5
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 4.2e-35 151.0 75 88.0
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 4.2e-35 151.0 85 82.4
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 5.4e-35 150.6 84 78.6
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 7.1e-35 150.2 79 84.8
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 7.1e-35 150.2 79 84.8
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 7.1e-35 150.2 75 90.7
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 7.1e-35 150.2 80 82.5
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 7.1e-35 150.2 84 82.1
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 9.3e-35 149.8 81 81.5
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 9.3e-35 149.8 81 81.5
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 9.3e-35 149.8 75 89.3
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 9.3e-35 149.8 75 92.0
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 9.3e-35 149.8 81 81.5
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 1.2e-34 149.4 76 88.2
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 1.6e-34 149.1 76 88.2
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 1.6e-34 149.1 76 85.5
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 1.6e-34 149.1 85 81.2
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 2.1e-34 148.7 76 89.5
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 2.1e-34 148.7 81 80.2
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.1e-34 148.7 79 83.5
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 2.1e-34 148.7 75 90.7
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 2.7e-34 148.3 85 81.2
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 3.5e-34 147.9 82 79.3
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 3.5e-34 147.9 81 80.2
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 3.5e-34 147.9 85 81.2
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 3.5e-34 147.9 78 82.1
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 4.6e-34 147.5 82 79.3
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 4.6e-34 147.5 81 80.2
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 4.6e-34 147.5 81 80.2
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 4.6e-34 147.5 75 90.7
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 4.6e-34 147.5 75 90.7
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 4.6e-34 147.5 75 90.7
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 4.6e-34 147.5 75 90.7
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 6.0e-34 147.1 76 86.8
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 6.0e-34 147.1 78 82.1
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 6.0e-34 147.1 76 84.2
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 6.0e-34 147.1 85 80.0
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 7.9e-34 146.7 77 85.7
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 7.9e-34 146.7 77 85.7
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 7.9e-34 146.7 77 85.7
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 7.9e-34 146.7 75 88.0
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 7.9e-34 146.7 81 80.2
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 7.9e-34 146.7 75 89.3
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.0e-33 146.4 78 82.1
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.0e-33 146.4 85 76.5
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.0e-33 146.4 78 84.6
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 1.3e-33 146.0 75 85.3
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 1.3e-33 146.0 85 80.0
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 1.3e-33 146.0 71 91.5
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 1.8e-33 145.6 85 80.0
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.3e-33 145.2 75 85.3
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 2.3e-33 145.2 85 78.8
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 2.3e-33 145.2 74 86.5
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 3.0e-33 144.8 85 80.0
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 3.9e-33 144.4 81 79.0
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 3.9e-33 144.4 81 79.0
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 3.9e-33 144.4 81 79.0
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 3.9e-33 144.4 81 79.0
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 3.9e-33 144.4 81 79.0
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 3.9e-33 144.4 87 77.0
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 3.9e-33 144.4 81 79.0
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 3.9e-33 144.4 81 79.0
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 3.9e-33 144.4 81 79.0
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 3.9e-33 144.4 76 82.9
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 3.9e-33 144.4 81 79.0
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 3.9e-33 144.4 101 69.3
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 5.1e-33 144.1 78 83.3
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 5.1e-33 144.1 78 83.3
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 5.1e-33 144.1 86 76.7
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 5.1e-33 144.1 74 86.5
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 5.1e-33 144.1 79 79.7
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 5.1e-33 144.1 75 84.0
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 6.7e-33 143.7 81 79.0
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 8.7e-33 143.3 86 75.6
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.1e-32 142.9 74 85.1
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 1.5e-32 142.5 74 83.8
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 1.9e-32 142.1 85 76.5
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 3.3e-32 141.4 75 82.7
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 5.6e-32 140.6 69 88.4
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 3.7e-31 137.9 74 81.1
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 4.8e-31 137.5 79 74.7
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 6.2e-31 137.1 65 90.8
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.4e-30 136.0 63 93.7
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 2.4e-30 135.2 62 93.5
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 6.9e-30 133.7 69 88.4
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 9.0e-30 133.3 61 93.4
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 2.0e-29 132.1 97 64.9
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 4.5e-29 131.0 61 91.8
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 9.9e-29 129.8 97 64.9
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 2.9e-28 128.3 60 90.0
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 6.0e-26 120.6 57 87.7
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 3.0e-25 118.2 64 84.4
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 4.8e-23 110.9 50 90.0
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 1.1e-22 109.8 50 90.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 1.8e-22 109.0 50 90.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 6.9e-22 107.1 50 88.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 9.0e-22 106.7 49 87.8
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 3.8e-20 101.3 76 59.2
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 1.1e-19 99.8 73 65.8
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 1.9e-19 99.0 78 59.0
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 2.5e-19 98.6 64 65.6
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 2.5e-19 98.6 78 56.4
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 4.2e-19 97.8 61 75.4
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 1.3e-12 76.3 74 48.6
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 1.4e-06 56.2 29 79.3
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 3.1e-06 55.1 23 91.3


User provided reference genes

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